Australian Microbiome Amplicons 16S 102.100.100/137756 J6562
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2020-09-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/t061-3v47 dataset_id:102.100.100/401921 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 2.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-911/ |
| bioplatforms_dataset_id | 102.100.100/401920 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0006 |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.57 |
| boron_hot_cacl2_meth | meth_2.1 |
| ccg_jira_ticket | BPAOPS-911 |
| clay (%) | 9.08 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 63.99 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2019-08-16T07:42:00 |
| color | GR |
| comments | 137756_16S_J6562_TCGAGGAC-GATAGCGT |
| conductivity (dS/m) | 0.062 |
| conductivity_meth | meth_2.1 |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401920 |
| date_of_transfer | 2020-06-10 |
| date_of_transfer_to_archive | 2020-06-16 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dtpa_copper (mg/kg) | 0.51 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 66.8 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 2.79 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 1.17 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 308.0 |
| env_broad_scale | 3 Production from Dryland Agriculture and Plantations |
| env_local_scale | 3.3.1 Cereals |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.06 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 3.46 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.55 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.1 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.09 |
| exc_sodium_meth | meth_2.1 |
| fine_sand (%) | 23.88 |
| fine_sand_meth | meth_2.1 |
| flow_id | J6562 |
| folder_name | 20200610_AM_16S_UNSW_J6562 |
| general_env_feature | Other (Mediterranean) |
| geo_loc_name | Australia:Western Australia [GAZ_00002789] |
| gravel (%) | 0 |
| gravel_meth | meth_2.1 |
| horizon | O horizon |
| index | TCGAGGAC-GATAGCGT |
| lat_lon (decimal_degrees) | -33.74385 118.12228 |
| latitude (decimal_degrees) | -33.74385 |
| local_class | Sodosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 118.12228 |
| nitrate_nitrogen (mg/kg) | 21.0 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| omics | Genomics |
| organic_carbon (%) | 1.43 |
| organic_carbon_meth | meth_2.1 |
| pass_fail | P |
| ph | 5.6 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 6.3 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 19.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 52.0 |
| potassium_colwell_meth | meth_2.1 |
| reads | 72841.0 |
| samp_collect_device | meth_1.17 |
| sample_attribution | IndigoAg |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_id | 102.100.100/137756 |
| sample_metadata_ingest_date | 2021-04-23 11:19:05 |
| sample_metadata_ingest_file | Indigo_SOIL_curated_UTC_depth_contextual_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; gen_env_Other_UPDATE_xlsx; SOIL_local_class_meth_UPDATE_xlsx; IndigoAG_meth_samp_collect_device_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Soil_profile_horizon_NCBI_format_curate_UPDATE_xlsx; |
| sample_site_location_description | Gnowangerup_Farm |
| sample_submitter | Peter McMeekin |
| sample_type | Soil |
| sand (%) | 87.87 |
| sand_meth | meth_2.1 |
| sequencing_facility | Ramaciotti |
| silt (%) | 3.04 |
| silt_meth | meth_2.1 |
| slope_gradient (%) | 0.0 |
| source_mat_id | 102.100.100/137756 |
| store_cond | frozen falcon tubes (50ml) |
| sulphur (mg/kg) | 4.6 |
| sulphur_meth | meth_2.1 |
| target | 16S |
| temp (degC) | 14.5 |
| texture | 1.5 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-911 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/137756 |
| utc_date_sampled | 2019-08-16 |
| utc_time_sampled | 07:42:00 |
| vegetation_type | Cropland |