Australian Microbiome Amplicons 16S 102.100.100/138233 J6H7B
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2020-08-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/kr2e-s652 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.0 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-907/ |
| bioplatforms_dataset_id | 102.100.100/401952 |
| bioplatforms_project | Australian Microbiome Initiative (AM) and Collaboration (AM linked) |
| bioplatforms_project_code | AM0004 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-907 |
| collection_date | 2019-05-30T12:01:51 |
| comments | 138233_16S_J6H7B_CGATCCGT-TCTACACT |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401952 |
| date_of_transfer | 2020-05-26 |
| date_of_transfer_to_archive | 2020-05-28 |
| depth (m) | 84.0 |
| depth_lower (m) | 84.0 |
| depth_upper (m) | 84.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | 20.9 |
| env_broad_scale | 6 Water |
| env_local_scale | 7.2 Open ocean water |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | J6H7B |
| folder_name | 20200526_AM_16S_UNSW_J6H7B |
| funding_agency | Australian Microbiome Initiative; DP170101925 |
| general_env_feature | Marine - pelagic |
| geo_loc_name | Indian Ocean:West Australia coast |
| index | CGATCCGT-TCTACACT |
| lat_lon (decimal_degrees) | -20.004722 110.0275 |
| latitude (decimal_degrees) | -20.004722 |
| longitude (decimal_degrees) | 110.0275 |
| nitrate_nitrite (μmol/L) | 1.44 |
| nitrite (μmol/L) | 0.153 |
| nucl_acid_ext | Powerwater |
| omics | Genomics |
| oxygen (μmol/L) | 181.592 |
| pass_fail | P |
| phosphate (μmol/L) | 0.29 |
| pres_rel (dbar) | 84.6 |
| reads | 38258.0 |
| salinity (PSU) | 34.9144 |
| samp_collect_device | meth_1.6 |
| samp_mat_process | meth_1.6 |
| sample_attribution | Amaranta Focardi |
| sample_database_file | AM_db_v4.2_202408091431.db |
| sample_id | 102.100.100/138233 |
| sample_metadata_ingest_date | 2024-02-01 13:24:40 |
| sample_metadata_ingest_file | Sample_submission_sheet_20220211_schema_v3_vocab_2_0_3_AM0004_v3_xlsx |
| sample_metadata_update_history | Lat_lon_reduce_sig_fig_curation_round_6dec_UPDATE_xlsx; |
| sample_site_location_description | Open Ocean |
| sample_submitter | Amaranta Focardi |
| sample_type | Pelagic |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 5.6 |
| source_mat_id | 102.100.100/138233 |
| store_cond | meth_1.6 |
| synonyms | IN19v0330MLD |
| target | 16S |
| temp (degC) | 23.565 |
| ticket | BPAOPS-907 |
| tot_depth_water_col (m) | 4267.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138233 |
| utc_date_sampled | 2019-05-30 |
| utc_time_sampled | 12:01:51 |
| voyage_code | IN2019_V03 |
| voyage_survey_link | https://www.cmar.csiro.au/data/trawler/survey_details.cfm?survey=IN2019_V03 |