Australian Microbiome Amplicons 16S 102.100.100/138235 J7LRK

Open Ocean, 16S MiSeq

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2020-09-08
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/kr2e-s652
am_environment Marine
ammonium (μmol/L) 0.0
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-915/
bioplatforms_dataset_id 102.100.100/401952
bioplatforms_project Australian Microbiome Initiative (AM) and Collaboration (AM linked)
bioplatforms_project_code AM0004
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-915
collection_date 2019-05-31T11:58:00
comments 138235_16S_J7LRK_CGATCCGT-ACGCGTGA
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401952
date_of_transfer 2020-06-10
date_of_transfer_to_archive 2020-06-16
depth (m) 44.0
depth_lower (m) 44.0
depth_upper (m) 44.0
description MiSeq data package
dilution_used neat
dna_concentration_submitter (ng/μL) 20.3
env_broad_scale 6 Water
env_local_scale 7.2 Open ocean water
env_medium Sea water [ENVO_00002149]
flow_id J7LRK
folder_name 20200610_AM_16S_UNSW_J7LRK
funding_agency Australian Microbiome Initiative; DP170101925
general_env_feature Marine - pelagic
geo_loc_name Indian Ocean:West Australia coast
index CGATCCGT-ACGCGTGA
lat_lon (decimal_degrees) -18.500278 110.000278
latitude (decimal_degrees) -18.500278
longitude (decimal_degrees) 110.000278
nitrate_nitrite (μmol/L) 0.02
nitrite (μmol/L) -0.001
nucl_acid_ext Powerwater
omics Genomics
pass_fail P
phosphate (μmol/L) 0.04
pres_rel (dbar) 44.9
reads 116200.0
samp_collect_device meth_1.6
samp_mat_process meth_1.6
sample_attribution Amaranta Focardi
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/138235
sample_metadata_ingest_date 2024-02-01 13:24:40
sample_metadata_ingest_file Sample_submission_sheet_20220211_schema_v3_vocab_2_0_3_AM0004_v3_xlsx
sample_metadata_update_history Lat_lon_reduce_sig_fig_curation_round_6dec_UPDATE_xlsx;
sample_site_location_description Open Ocean
sample_submitter Amaranta Focardi
sample_type Pelagic
sequencing_facility Ramaciotti
silicate (μmol/L) 2.0
source_mat_id 102.100.100/138235
store_cond meth_1.6
synonyms IN19v0332DCM
target 16S
temp (degC) 26.786
ticket BPAOPS-915
tot_depth_water_col (m) 4860.0
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138235
utc_date_sampled 2019-05-31
utc_time_sampled 11:58:00
voyage_code IN2019_V03
voyage_survey_link https://www.cmar.csiro.au/data/trawler/survey_details.cfm?survey=IN2019_V03