Australian Microbiome Amplicons 16S 102.100.100/138243 J7B92
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2020-09-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/kr2e-s652 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.0 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-914/ |
| bioplatforms_dataset_id | 102.100.100/401952 |
| bioplatforms_project | Australian Microbiome Initiative (AM) and Collaboration (AM linked) |
| bioplatforms_project_code | AM0004 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-914 |
| collection_date | 2019-06-03T12:10:00 |
| comments | 138243_16S_J7B92_CGATCCGT-CTAGTATG |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401952 |
| date_of_transfer | 2020-06-10 |
| date_of_transfer_to_archive | 2020-06-16 |
| depth (m) | 5.0 |
| depth_lower (m) | 5.0 |
| depth_upper (m) | 5.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | 13.5 |
| env_broad_scale | 6 Water |
| env_local_scale | 7.2 Open ocean water |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | J7B92 |
| folder_name | 20200610_AM_16S_UNSW_J7B92 |
| funding_agency | Australian Microbiome Initiative; DP170101925 |
| general_env_feature | Marine - pelagic |
| geo_loc_name | Indian Ocean:West Australia coast |
| index | CGATCCGT-CTAGTATG |
| lat_lon (decimal_degrees) | -14.0 110.0080556 |
| latitude (decimal_degrees) | -14.0 |
| longitude (decimal_degrees) | 110.0080556 |
| nitrate_nitrite (μmol/L) | 0.03 |
| nitrite (μmol/L) | 0.005 |
| nucl_acid_ext | Powerwater |
| omics | Genomics |
| pass_fail | P |
| phosphate (μmol/L) | 0.07 |
| pres_rel (dbar) | 5.6 |
| reads | 128633.0 |
| samp_collect_device | meth_Sterivex;peristaltic pump |
| sample_attribution | Amaranta Focardi |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/138243 |
| sample_metadata_ingest_date | 2024-02-01 13:24:40 |
| sample_metadata_ingest_file | Sample_submission_sheet_20220211_schema_v3_vocab_2_0_3_AM0004_v3_xlsx |
| sample_site_location_description | Open Ocean |
| sample_submitter | Amaranta Focardi |
| sample_type | Pelagic |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 2.6 |
| source_mat_id | 102.100.100/138243 |
| store_cond | meth_minus 80c |
| synonyms | IN19v0338SFC |
| target | 16S |
| temp (degC) | 28.053 |
| ticket | BPAOPS-914 |
| tot_depth_water_col (m) | 5716.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138243 |
| utc_date_sampled | 2019-06-03 |
| utc_time_sampled | 12:10:00 |
| voyage_code | IN2019_V03 |
| voyage_survey_link | https://www.cmar.csiro.au/data/trawler/survey_details.cfm?survey=IN2019_V03 |