Australian Microbiome Amplicons 16S 102.100.100/138924 JL8GH
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2021-09-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.0058 |
| ammonium_meth | meth_2.25 |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1077/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1077 |
| chlorophyll_a (mg/m3) | 0.121 |
| chlorophyll_a_meth | meth_2.25 |
| chlorophyll_ctd (mg/m3) | 0.105 |
| chlorophyll_ctd_meth | meth_2.25 |
| coastal_id | WQQ319_D0 |
| collection_date | 2021-02-14T23:45:00 |
| comments | 138924_16S_JL8GH_AGTAGAGG-GATAGCGT |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| date_of_transfer | 2021-06-03 |
| date_of_transfer_to_archive | 2021-06-03 |
| depth (m) | 0.5 |
| depth_lower (m) | 0.5 |
| depth_upper (m) | 0.5 |
| description | MiSeq data package |
| dilution_used | neat |
| env_broad_scale | Coastal water |
| env_local_scale | 7.1.1 Coastal water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | JL8GH |
| folder_name | 20210603_AM_16S_UNSW_JL8GH |
| funding_agency | AIMS; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Barrier Reef [GAZ:00009717] |
| index | AGTAGAGG-GATAGCGT |
| lat_lon (decimal_degrees) | -16.112 145.482 |
| latitude (decimal_degrees) | -16.112 |
| longitude (decimal_degrees) | 145.482 |
| microbial_abundance (cells/mL) | 679869.0 |
| nitrate_nitrite (μmol/L) | 0.06 |
| nitrate_nitrite_meth | meth_2.25 |
| nitrite (μmol/L) | 1e-10 |
| nitrite_meth | meth_2.25 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| part_org_carb (μmol/L) | 3.67 |
| part_org_carb_meth | meth_2.25 |
| pass_fail | P |
| phosphate (μmol/L) | 1e-10 |
| phosphate_meth | meth_2.25 |
| picoeukaryotes (cells/mL) | 2367.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 57362.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 213502.0 |
| salinity (PSU) | 33.16 |
| salinity_lab (PSU) | 32.748 |
| salinity_lab_meth | meth_2.25 |
| salinity_meth | meth_2.25 |
| samp_collect_device | meth_1.5.2 |
| samp_mat_process | meth_1.5.2 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | Great Barrier Reef Marine Monitoring Program for Inshore Water Quality; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/138924 |
| sample_metadata_ingest_date | 2023-12-12 13:58:07 |
| sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_GBR_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Cape Tribulation |
| sample_submitter | AIMS - David Bourne (d.bourne@aims.gov.au); Renee Gruber (r.gruber@aims.gov.au) |
| sample_type | Coastal water |
| secchi_depth (m) | 12.0 |
| secchi_depth_meth | meth_2.25 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 5.24 |
| silicate_meth | meth_2.25 |
| source_mat_id | 102.100.100/138924 |
| store_cond | meth_1.5.2 |
| synechococcus (cells/mL) | 29865.0 |
| synechococcus_meth | meth_2.2 |
| target | 16S |
| temp (degC) | 29.92 |
| temp_meth | meth_2.25 |
| ticket | BPAOPS-1077 |
| tot_depth_water_col (m) | 19.0 |
| tot_depth_water_col_meth | meth_2.25 |
| transmittance (%) | 82.6 |
| transmittance_meth | meth_2.25 |
| tss (mg/L) | 0.13 |
| tss_meth | meth_2.25 |
| turbidity (NTU) | -9999.0 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138924 |
| utc_date_sampled | 2021-02-14 |
| utc_time_sampled | 23:45:00 |