Australian Microbiome Amplicons 16S 102.100.100/139804 J6HNK

Rottnest Island, 16S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2020-08-24
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2341.25
alkalinity_meth meth_2.2
allo (mg/m3) 0.006
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.014
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.05
ammonium_meth meth_2.2
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-906/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.033
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-906
chlorophyll_a (mg/m3) 0.357
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.061
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.048
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.047
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.1745
chlorophyll_ctd_meth meth_2.2
collection_date 2018-01-25T02:00:00
comments 139804_16S_J6HNK_ACGCCACG-CGATCTAC
conductivity_aqueous (S/m) 5.075
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.007
cphlide_a_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2020-05-26
date_of_transfer_to_archive 2020-05-28
density (kg/m3) 1024.8545
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MiSeq data package
diadino (mg/m3) 0.018
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.013
dv_cphl_a_and_cphl_a (mg/m3) 0.37
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.061
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id J6HNK
folder_name 20200526_AM_16S_UNSW_J6HNK
fuco (mg/m3) 0.051
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ:00051147]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.084
hex_fuco_meth meth_2.2
imos_site_code NRSROT
index ACGCCACG-CGATCTAC
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.007
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nrs_sample_code ROT20180125_0
nrs_trip_code ROT20180125
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 223.9
oxygen_ctd_vol (mL/L) 210.31
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.07
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 10679.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.014
pras_meth meth_2.2
prochlorococcus (cells/mL) 12031.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 145549.0
salinity (PSU) 35.7567
salinity_lab (PSU) 35.763
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/139804
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 15.5
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1.0
silicate_meth meth_2.2
source_mat_id 102.100.100/139804
store_cond meth_1.4
synechococcus (cells/mL) 21817.5
synechococcus_meth meth_2.2
target 16S
temp (degC) 21.8343
temp_meth meth_2.2
ticket BPAOPS-906
total_co2 (μmol/kg) 2039.24
total_co2_meth meth_2.2
tss (mg/L) 0.5
tss_meth meth_2.2
turbidity (NTU) 0.0709
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139804
utc_date_sampled 2018-01-25
utc_time_sampled 02:00:00
viola (mg/m3) 0.005
viola_meth meth_2.2
zea (mg/m3) 0.019
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 12.5539
zooplankton_biomass_meth meth_2.2int