Australian Microbiome Amplicons 16S 102.100.100/140298 JDD9G
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2021-02-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/nhv9-3503 |
| am_environment | Marine |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-977/ |
| bioplatforms_dataset_id | 102.100.100/401919 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0005 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-977 |
| collection_date | 2020-05-05T07:42:00 |
| comments | 140298_16S_JDD9G_TCTAGCGT-TCTACACT |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401919 |
| date_of_transfer | 2020-11-18 |
| date_of_transfer_to_archive | 2020-11-18 |
| description | MiSeq data package |
| dilution_used | 1:25 |
| dna_concentration_submitter_meth | Qubit HS assay |
| env_broad_scale | 7.1 Coastal water (Estuary and coastal water) |
| env_local_scale | 7.1.1 Coastal water- intensive use |
| env_medium | Fresh water [ENVO_00002011] |
| flow_id | JDD9G |
| folder_name | 20201118_AM_16S_UNSW_JDD9G |
| funding_agency | Australian Microbiome Initiative |
| general_env_feature | Riverine (rivers and streams) |
| geo_loc_name | Queensland |
| index | TCTAGCGT-TCTACACT |
| lat_lon (decimal_degrees) | -27.329583 153.087083 |
| latitude (decimal_degrees) | -27.329583 |
| longitude (decimal_degrees) | 153.087083 |
| nucl_acid_ext | 1.16 |
| omics | Genomics |
| pass_fail | P |
| reads | 209230.0 |
| samp_collect_device | meth_1.16 |
| samp_mat_process | meth_1.16 |
| sample_attribution | Chris Rinke |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/140298 |
| sample_metadata_ingest_date | 2023-12-12 13:58:45 |
| sample_metadata_ingest_file | AM_ContextualMetadata_AM0005_Rinke_newtemplate_Feb22_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Shorncliffe |
| sample_submitter | Apoorva Prabhu |
| sample_type | Coastal water |
| sequencing_facility | Ramaciotti |
| source_mat_id | 102.100.100/140298 |
| store_cond | meth_rt |
| target | 16S |
| ticket | BPAOPS-977 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/140298 |
| utc_date_sampled | 2020-05-05 |
| utc_time_sampled | 07:42:00 |
| vegetation_type | Other |