Australian Microbiome Amplicons 16S 102.100.100/141039 JK8CJ

Derwent Estuary G2, 16S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-05-11
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/4wcd-5z12
am_environment Marine
ammonium (μmol/L) 2.1
ammonium_meth meth_2.20
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1025/
bioplatforms_dataset_id 102.100.100/401932
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM0016
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1025
chlorophyll_a (mg/m3) 13.0
chlorophyll_a_meth meth_2.20
collection_date 2020-07-21T02:00:00
comments 141039_16S_JK8CJ_GACTTGGT-ACGACGTG
conductivity_aqueous (S/m) 4.0
conductivity_aqueous_meth meth_2.21
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401932
date_of_transfer 2021-02-10
date_of_transfer_to_archive 2021-02-16
depth (m) 0.5
depth_lower (m) 0.5
depth_upper (m) 0.5
description MiSeq data package
dilution_used neat
env_broad_scale 6 Water
env_local_scale 6.6.3 Estuary/coastal waters—intensive use
env_medium Saline water [ENVO_00002010]
flow_id JK8CJ
folder_name 20210210_AM_16S_UNSW_JK8CJ
funding_agency CSIRO; Derwent Estuary Program
general_env_feature Estuarine (tidal including deltas; tidal marshes and mangrove swamps)
geo_loc_name Australia:Tasmania
index GACTTGGT-ACGACGTG
lat_lon (decimal_degrees) -42.891 147.3505
latitude (decimal_degrees) -42.891
longitude (decimal_degrees) 147.3505
nitrate_nitrite (μmol/L) 5.6
nitrate_nitrite_meth meth_2.20
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 279.71
oxygen_meth meth_2.20
pass_fail P
ph 8.0
ph_meth meth_2.21
phosphate (μmol/L) 0.6
phosphate_meth meth_2.20
reads 99674.0
salinity (PSU) 25.39
salinity_meth meth_2.21
samp_collect_device meth_1.18
samp_mat_process meth_1.18
samp_size (L) 1.6
samp_vol_we_dna_ext (L) 1.6
sample_attribution CSIRO; Derwent Estuary Program
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/141039
sample_metadata_ingest_date 2021-05-13 16:03:08
sample_metadata_ingest_file AWQalldata_current_to_September2020_AM_ids_square20210513_AMcurated_JVcurated_20210513_xlsx
sample_metadata_update_history AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; AWQ2021current_AM_ids_square_20211111_AMcurated_20211111_UPDATE_xlsx; DEP_methods_2_2_to_meth_2_20_UPDATE_xlsx; DEP_rounded_values_UPDATE_xlsx;
sample_site_location_description Derwent Estuary G2
sample_submitter Jodie van de Kamp
sample_type Coastal water
sample_volume_notes High biomass/particulate matter
secchi_depth (m) 4.0
secchi_depth_meth meth_2.21
sequencing_facility Ramaciotti
source_mat_id 102.100.100/141039
store_cond meth_1.18
target 16S
temp (degC) 9.781
temp_meth meth_2.21
ticket BPAOPS-1025
tot_depth_water_col (m) 21.4
tss (mg/L) 3.0
tss_meth meth_2.20
turbidity (NTU) 1.17
turbidity_meth meth_2.21
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141039
utc_date_sampled 2020-07-21
utc_time_sampled 02:00:00