Australian Microbiome Amplicons 16S 102.100.100/141120 JK5PT

Darwin, 16S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-05-11
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 1933.36
alkalinity_meth meth_2.2
allo (mg/m3) 0.026
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.131
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.05
ammonium_meth meth_2.2
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1024/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 1e-10
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1024
chlorophyll_a (mg/m3) 2.864
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.335
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 0.288
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.235
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.018
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 1.8175
chlorophyll_ctd_meth meth_2.2
collection_date 2018-02-08T21:30:00
comments 141120_16S_JK5PT_CCAGTGTA-AAGCAGCA
conductivity_aqueous (S/m) 4.8083
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-02-10
date_of_transfer_to_archive 2021-02-16
density (kg/m3) 1016.9274
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MiSeq data package
diadino (mg/m3) 0.077
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 2.864
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.335
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id JK5PT
folder_name 20210210_AM_16S_UNSW_JK5PT
fuco (mg/m3) 0.985
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Beagle Gulf [GAZ:00051048]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 1e-10
hex_fuco_meth meth_2.2
imos_site_code NRSDAR
index CCAGTGTA-AAGCAGCA
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -12.4 130.768
latitude (decimal_degrees) -12.4
longitude (decimal_degrees) 130.768
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.031
neo_meth meth_2.2
nitrate (μmol/L) 0.8
nitrate_meth meth_2.2
nitrite (μmol/L) 0.19
nitrite_meth meth_2.2
nrs_sample_code DAR20180208_2130_0
nrs_trip_code DAR20180208_2130
nucl_acid_ext meth_3.1.9
omics Genomics
pass_fail P
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.18
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 37794.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.094
pras_meth meth_2.2
prochlorococcus (cells/mL) 1625.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 106246.0
salinity (PSU) 28.3977
salinity_lab (PSU) 27.636
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 1.9
samp_vol_we_dna_ext (L) 1.9
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/141120
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Darwin
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Low biomass/particulate matte
secchi_depth (m) 2.5
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 12.0
silicate_meth meth_2.2
source_mat_id 102.100.100/141120
store_cond meth_1.4
synechococcus (cells/mL) 213216.0
synechococcus_meth meth_2.2
target 16S
temp (degC) 29.5997
temp_meth meth_2.2
ticket BPAOPS-1024
total_co2 (μmol/kg) 1737.07
total_co2_meth meth_2.2
tss (mg/L) 7.7
tss_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141120
utc_date_sampled 2018-02-08
utc_time_sampled 21:30:00
viola (mg/m3) 0.026
viola_meth meth_2.2
zea (mg/m3) 0.113
zea_meth meth_2.2