Australian Microbiome Amplicons 16S 102.100.100/141313 JKJTF

Rottnest Island, 16S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-09-01
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
am_environment Marine
ammonium (μmol/L) 0.14
ammonium_meth meth_2.2
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1078/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1078
chlorophyll_ctd (mg/m3) 0.4956
chlorophyll_ctd_meth meth_2.2
collection_date 2020-07-30T01:27:00
comments 141313_16S_JKJTF_GGTGTCTA-CGATCTAC
conductivity_aqueous (S/m) 4.9177
conductivity_aqueous_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-06-03
date_of_transfer_to_archive 2021-06-03
density (kg/m3) 1025.1262
density_meth meth_2.2
depth (m) 30.0
depth_lower (m) 30.0
depth_upper (m) 30.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id JKJTF
folder_name 20210603_AM_16S_UNSW_JKJTF
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ:00051147]
imos_site_code NRSROT
index GGTGTCTA-CGATCTAC
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
nitrate (μmol/L) 0.4
nitrate_meth meth_2.2
nitrite (μmol/L) 0.12
nitrite_meth meth_2.2
nrs_sample_code ROT20200730_30
nrs_trip_code ROT20200730
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 214.3
oxygen_ctd_vol (mL/L) 201.0
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.09
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 9692.0
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 10137.5
prochlorococcus_meth meth_2.2int
reads 151423.0
salinity (PSU) 35.521
salinity_lab (PSU) 35.515
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/141313
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 20.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1.8
silicate_meth meth_2.2
source_mat_id 102.100.100/141313
store_cond meth_1.4
synechococcus (cells/mL) 23472.0
synechococcus_meth meth_2.2int
target 16S
temp (degC) 20.5923
temp_meth meth_2.2
ticket BPAOPS-1078
tss (mg/L) 0.5
tss_meth meth_2.2int
turbidity (NTU) 0.1309
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141313
utc_date_sampled 2020-07-30
utc_time_sampled 01:27:00
zooplankton_biomass (mg/m3) 40.4555
zooplankton_biomass_meth meth_2.2int