Australian Microbiome Amplicons 16S 102.100.100/400591 KFTPF

Long Reef; Port Phillip Bay, 16S MiSeq

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Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2022-09-19
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/bh2s-3d51
am_environment Marine
ammonium (μmol/L) 0.2141829065
ammonium_meth meth_2.29
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1280/
bioplatforms_dataset_id 102.100.100/401915
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM0001
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1280
chlorophyll_a (mg/m3) 0.3
chlorophyll_a_meth meth_2.29
coastal_id EPA VIC Site_Id 369
collection_date 2021-10-12T02:20:00
comments 400591_16S_KFTPF_AGTAGAGG-ACGACGTG
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401915
date_of_transfer 2022-06-21
date_of_transfer_to_archive 2022-06-22
depth (m) 2.0
depth_lower (m) 2.0
depth_upper (m) 2.0
description MiSeq data package
dilution_used Neat
env_broad_scale 7 Other
env_local_scale 7.1.3 Coastal water-intensive use
env_medium Saline water [ENVO_00002010]
flow_id KFTPF
fluor (AU) 0.4303
fluor_meth meth_2.29
folder_name 20220621_AM_16S_UNSW_KFTPF
funding_agency Environment Protection Agency Victoria; Deakin University; CSIRO; IMOS
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Port Phillip Bay [GAZ:00045304]
index AGTAGAGG-ACGACGTG
lat_lon (decimal_degrees) -38.02932 144.592819
latitude (decimal_degrees) -38.02932
longitude (decimal_degrees) 144.592819
microbial_abundance (cells/mL) 2187363.0
nitrate_nitrite (μmol/L) 0.4997601151
nitrate_nitrite_meth meth_2.29
nitrite (μmol/L) 0.1427886043
nitrite_meth meth_2.29
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 256.4222763923
oxygen_meth meth_2.29
par (μmol/m2/s) 126.13
par_meth meth_2.29
pass_fail P
pcr_plate_name VAN10517-HOL10528_16S1_SetE
ph 8.911
ph_meth meth_2.29
phosphate (μmol/L) 1.7434110845
phosphate_meth meth_2.29
picoeukaryotes (cells/mL) 913.0
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 672.0
prochlorococcus_meth meth_2.2
reads 85793.0
salinity (PSU) 35.3611
salinity_meth meth_2.29
samp_collect_device meth_1.5.1
samp_mat_process meth_1.5.1
sample_attribution Deakin University; CSIRO; IMOS
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400591
sample_metadata_ingest_date 2023-12-12 13:58:30
sample_metadata_ingest_file Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_PortPhillipBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx
sample_site_location_description Long Reef; Port Phillip Bay
sample_submitter Deakin University - Craig Sherman (craig.sherman@deakin.edu.au)
sample_type Coastal water
secchi_depth (m) 3.5
secchi_depth_meth meth_2.29
sequencing_facility Ramaciotti
silicate (μmol/L) 1.1651131824
silicate_meth meth_2.29
source_mat_id 102.100.100/400591
store_cond meth_1.5.1
synechococcus (cells/mL) 3266.0
synechococcus_meth meth_2.2
target 16S
temp (degC) 14.8451
temp_meth meth_2.29
ticket BPAOPS-1280
tss (mg/L) 2.7
tss_meth meth_2.29
turbidity (NTU) 1.0581
turbidity_meth meth_2.29
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400591
utc_date_sampled 2021-10-12
utc_time_sampled 02:20:00