Australian Microbiome Amplicons 16S 102.100.100/401135 K3W7Y
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-02-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/82v7-0s68 |
| am_environment | Marine |
| amplicon | 16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1173/ |
| bioplatforms_dataset_id | 102.100.100/401945 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0028 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1173 |
| collection_date | 2021-08-12T11:56:00 |
| comments | 401135_16S_K3W7Y_CGAGAAGA-ACGCGTGA |
| data_type | 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401945 |
| date_of_transfer | 2021-11-26 |
| date_of_transfer_to_archive | 2021-11-29 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | 6.1 |
| dna_concentration_submitter_meth | meth_Nanodrop |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.1 Coastal water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | K3W7Y |
| folder_name | 20211126_AM_16S_UNSW_K3W7Y |
| funding_agency | UTS; Food Agility CRC; DPI |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Sydney; New South Wales |
| index | CGAGAAGA-ACGCGTGA |
| lat_lon (decimal_degrees) | -34.00681 151.1921 |
| latitude (decimal_degrees) | -34.00681 |
| longitude (decimal_degrees) | 151.1921 |
| nucl_acid_ext | QIACUBE HT Powersoil Pro Modified |
| omics | Genomics |
| pass_fail | P |
| pcr_plate_name | HOL9762_AJA9824_16S1_SetG |
| reads | 86788.0 |
| salinity_lab (PSU) | 35.3 |
| samp_collect_device | meth_50ml syringe |
| samp_size (L) | 0.05 |
| samp_vol_we_dna_ext (L) | 0.05 |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/401135 |
| sample_metadata_ingest_date | 2024-02-01 13:24:58 |
| sample_metadata_ingest_file | Sample_submission_sheet_AM0028_AJANI_Final_xlsx |
| sample_site_location_description | Towra Point |
| sample_submitter | Penelope Ajani |
| sample_type | Coastal water |
| sequencing_facility | Ramaciotti |
| source_mat_id | 102.100.100/401135 |
| store_cond | meth_4 °c longmire |
| target | 16S |
| temp (degC) | 16.35 |
| ticket | BPAOPS-1173 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:401135 |
| utc_date_sampled | 2021-08-12 |
| utc_time_sampled | 11:56:00 |