Australian Microbiome Amplicons 16S 102.100.100/402982 L796K

Maria Island, 16S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-11-19
Access Control Mode date
Sequence Data Type illumina-amplicons
alkalinity (μmol/kg) 2333.06
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.12
ammonium_meth meth_2.2
amplicon 16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1462/230731_AM_16S_UNSW_L796K/
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1462
chlorophyll_ctd (mg/m3) 0.1877
chlorophyll_ctd_meth meth_2.2
collection_date 2021-04-28T00:18:00
comments 402982_16S_L796K_AATGCCTC-TCTACACT
conductivity_aqueous (S/m) 4.4581
conductivity_aqueous_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2023-08-21
date_of_transfer_to_archive 2023-08-22
density (kg/m3) 1026.3749
density_meth meth_2.2
depth (m) 50.0
depth_lower (m) 50.0
depth_upper (m) 50.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id L796K
folder_name 230731_AM_16S_UNSW_L796K
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
imos_site_code NRSMAI
index AATGCCTC-TCTACACT
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
nitrate (μmol/L) 2.2
nitrate_meth meth_2.2
nitrite (μmol/L) 0.58
nitrite_meth meth_2.2
nrs_sample_code MAI20210428_50
nrs_trip_code MAI20210428
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 238.3
oxygen_ctd_vol (mL/L) 237.9771
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.3
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 5877.5
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 1256.5
prochlorococcus_meth meth_2.2
reads 133641.0
salinity (PSU) 35.5451
salinity_lab (PSU) 35.535
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/402982
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 21.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1.4
silicate_meth meth_2.2
source_mat_id 102.100.100/402982
store_cond meth_1.4
synechococcus (cells/mL) 11300.0
synechococcus_meth meth_2.2
target 16S
temp (degC) 16.0434
temp_meth meth_2.2
ticket BPAOPS-1462
total_co2 (μmol/kg) 2084.84
total_co2_meth meth_2.2
turbidity (NTU) 0.7101
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/402982
utc_date_sampled 2021-04-28
utc_time_sampled 00:18:00
zooplankton_biomass (mg/m3) 11.4577
zooplankton_biomass_meth meth_2.2int