Australian Microbiome Amplicons 16S 102.100.100/403622 LHMB7

Rottnest Island, 16S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2024-08-13
Access Control Mode date
Sequence Data Type illumina-amplicons
alkalinity (μmol/kg) 2310.38
alkalinity_meth meth_2.2
allo (mg/m3) 0.021
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.021
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.17
ammonium_meth meth_2.2
amplicon 16S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
anth (mg/m3) 0.004
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1590/240216_AM_16S_UNSW_LHMB7/
biotic_relationship Free-living
but_fuco (mg/m3) 0.033
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1590
chlorophyll_a (mg/m3) 0.575
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.098
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.063
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.027
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.0358
chlorophyll_ctd_meth meth_2.2
collection_date 2023-06-13T00:40:00
comments 403622_16S_LHMB7_CCTGAACT-TCTACACT
conductivity_aqueous (S/m) 4.8864
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-05-15
date_of_transfer_to_archive 2024-05-17
density (kg/m3) 1024.8334
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
diadino (mg/m3) 0.028
diadino_meth meth_2.2
diato (mg/m3) 0.002
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
download Replaces BPAOPS-1558
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.575
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.098
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LHMB7
folder_name 240216_AM_16S_UNSW_LHMB7
fuco (mg/m3) 0.074
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.086
hex_fuco_meth meth_2.2
imos_site_code NRSROT
index CCTGAACT-TCTACACT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.009
neo_meth meth_2.2
nitrate (μmol/L) 0.5
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code ROT20230613_20
nrs_trip_code ROT20230613
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 218.8
oxygen_ctd_vol (mL/L) 193.0
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.007
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.2
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 14624.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.027
pras_meth meth_2.2
prochlorococcus (cells/mL) 9010.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 127224.0
salinity (PSU) 35.211
salinity_lab (PSU) 35.209
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/403622
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_metadata_update_history AODN_AM_NRS_202404030929_FullREPLACE_xlsx;AODN_AM_NRS_202406191253_FullREPLACE_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 13.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 2.5
silicate_meth meth_2.2
source_mat_id 102.100.100/403622
store_cond meth_1.4
synechococcus (cells/mL) 49781.5
synechococcus_meth meth_2.2
target 16S
temp (degC) 20.6643
temp_meth meth_2.2
ticket BPAOPS-1590
total_co2 (μmol/kg) 2028.82
total_co2_meth meth_2.2
turbidity (NTU) 0.4797
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403622
utc_date_sampled 2023-06-13
utc_time_sampled 00:40:00
viola (mg/m3) 0.009
viola_meth meth_2.2
zea (mg/m3) 0.034
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 14.491
zooplankton_biomass_meth meth_2.2int