Australian Microbiome Amplicons 16S 102.100.100/403673 LHMB7

Rottnest Island, 16S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2024-08-13
Access Control Mode date
Sequence Data Type illumina-amplicons
allo (mg/m3) 0.006
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.014
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.11
ammonium_meth meth_2.2
amplicon 16S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1590/240216_AM_16S_UNSW_LHMB7/
biotic_relationship Free-living
but_fuco (mg/m3) 0.019
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1590
chlorophyll_a (mg/m3) 0.269
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.043
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.034
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.016
chlorophyll_c3_meth meth_2.2
collection_date 2023-07-31T03:27:00
comments 403673_16S_LHMB7_CAAGCATG-AAGCAGCA
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-05-15
date_of_transfer_to_archive 2024-05-17
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MiSeq data package
diadino (mg/m3) 0.007
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
download Replaces BPAOPS-1558
dv_cphl_a (mg/m3) 0.029
dv_cphl_a_and_cphl_a (mg/m3) 0.298
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.043
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LHMB7
folder_name 240216_AM_16S_UNSW_LHMB7
fuco (mg/m3) 0.017
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ_00051147]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.039
hex_fuco_meth meth_2.2
imos_site_code NRSROT
index CAAGCATG-AAGCAGCA
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.003
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code ROT20230731_0
nrs_trip_code ROT20230731
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 229.7
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.003
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.09
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 9187.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.008
pras_meth meth_2.2
prochlorococcus (cells/mL) 4707.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 63119.0
salinity_lab (PSU) 35.386
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/403673
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_metadata_update_history AODN_AM_NRS_202404030929_FullREPLACE_xlsx;AODN_AM_NRS_202406191253_FullREPLACE_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 47.5
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 2.5
silicate_meth meth_2.2
source_mat_id 102.100.100/403673
store_cond meth_1.4
synechococcus (cells/mL) 55990.5
synechococcus_meth meth_2.2
target 16S
ticket BPAOPS-1590
tss (mg/L) 0.4
tss_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403673
utc_date_sampled 2023-07-31
utc_time_sampled 03:27:00
viola (mg/m3) 0.002
viola_meth meth_2.2
zea (mg/m3) 0.044
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 18.3574
zooplankton_biomass_meth meth_2.2int