Australian Microbiome Amplicons 16S 102.100.100/403691 LHMB7

Port Hacking, 16S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2024-08-13
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Marine
amplicon 16S
analysis_software Local Run Manager
analysis_software_version 4.1.0
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/16s/BPAOPS-1590/240216_AM_16S_UNSW_LHMB7/
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1590
chlorophyll_ctd (mg/m3) 2.9647
chlorophyll_ctd_meth meth_2.2
collection_date 2023-04-18T22:33:00
comments 403691_16S_LHMB7_ACATTCAG-GTCTAGTG
conductivity_aqueous (S/m) 5.071
conductivity_aqueous_meth meth_2.2
data_type 16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2024-05-15
date_of_transfer_to_archive 2024-05-17
density (kg/m3) 1024.542
density_meth meth_2.2
depth (m) 25.0
depth_lower (m) 25.0
depth_upper (m) 25.0
description MiSeq data package
dilution_used neat
download Replaces BPAOPS-1558
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LHMB7
folder_name 240216_AM_16S_UNSW_LHMB7
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ_00000352]
imos_site_code NRSPHB
index ACATTCAG-GTCTAGTG
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code PHB20230418_25
nrs_trip_code PHB20230418
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 211.6092
oxygen_ctd_vol_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.09
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 15282.5
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 7697.0
prochlorococcus_meth meth_2.2
reads 143128.0
salinity (PSU) 35.3838
salinity_lab (PSU) 35.378
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202408091431.db
sample_id 102.100.100/403691
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_metadata_update_history AODN_AM_NRS_202406191253_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 14.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.5
silicate_meth meth_2.2
source_mat_id 102.100.100/403691
store_cond meth_1.4
synechococcus (cells/mL) 58250.5
synechococcus_meth meth_2.2
target 16S
temp (degC) 22.2404
temp_meth meth_2.2
ticket BPAOPS-1590
turbidity (NTU) 0.0462
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403691
utc_date_sampled 2023-04-18
utc_time_sampled 22:33:00
zooplankton_biomass (mg/m3) 6.8534
zooplankton_biomass_meth meth_2.2int