Australian Microbiome Amplicons 18S 102.100.100/139036 K86D5
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-05-25 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| absorbance_260_280_ratio_submitter | 1.53 |
| absorbance_260_280_ratio_submitter_meth | meth_3.3.1 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.5711544173 |
| ammonium_meth | meth_2.29 |
| amplicon | 18S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1202/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1202 |
| chlorophyll_a (mg/m3) | 6.9 |
| chlorophyll_a_meth | meth_2.29 |
| coastal_id | EPA VIC Site_Id 1991 |
| collection_date | 2021-05-21T05:50:00 |
| comments | 139036_18S_K86D5_CTCTCTAC-CTCTCTAT |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| date_of_transfer | 2022-02-24 |
| date_of_transfer_to_archive | 2022-02-24 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | 19.75 |
| dna_concentration_submitter_meth | meth_3.3.1 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.1.3 Coastal water-intensive use |
| env_medium | Saline water [ENVO_00002010] |
| flow_id | K86D5 |
| fluor (AU) | 3.851 |
| fluor_meth | meth_2.29 |
| folder_name | 20220224_AM_18S_UNSW_K86D5 |
| funding_agency | Environment Protection Agency Victoria; Deakin University; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Port Phillip Bay [GAZ:00045304] |
| index | CTCTCTAC-CTCTCTAT |
| lat_lon (decimal_degrees) | -37.87019 144.933807 |
| latitude (decimal_degrees) | -37.87019 |
| longitude (decimal_degrees) | 144.933807 |
| microbial_abundance (cells/mL) | 1534156.0 |
| nitrate_nitrite (μmol/L) | 0.2141829065 |
| nitrate_nitrite_meth | meth_2.29 |
| nitrite (μmol/L) | 0.2141829065 |
| nitrite_meth | meth_2.29 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | 277.9548721795 |
| oxygen_meth | meth_2.29 |
| par (μmol/m2/s) | 180.47 |
| par_meth | meth_2.29 |
| pass_fail | P |
| pcr_plate_name | HOL10054_VAN10044_18S4_setA |
| ph | 8.422 |
| ph_meth | meth_2.29 |
| phosphate (μmol/L) | 2.0016942081 |
| phosphate_meth | meth_2.29 |
| picoeukaryotes (cells/mL) | 1681.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 1018.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 197586.0 |
| salinity (PSU) | 35.3774 |
| salinity_meth | meth_2.29 |
| samp_collect_device | meth_1.5.1 |
| samp_mat_process | meth_1.5.1 |
| sample_attribution | Environment Protection Agency Victoria; Deakin University; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/139036 |
| sample_metadata_ingest_date | 2023-12-12 13:58:30 |
| sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_PortPhillipBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Hobsons; Port Phillip Bay |
| sample_submitter | Deakin University - Craig Sherman (craig.sherman@deakin.edu.au) |
| sample_type | Coastal water |
| secchi_depth (m) | 2.5 |
| secchi_depth_meth | meth_2.29 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 3.4953395473 |
| silicate_meth | meth_2.29 |
| source_mat_id | 102.100.100/139036 |
| store_cond | meth_1.5.1 |
| synechococcus (cells/mL) | 1765.0 |
| synechococcus_meth | meth_2.2 |
| target | 18S |
| temp (degC) | 13.8862 |
| temp_meth | meth_2.29 |
| ticket | BPAOPS-1202 |
| tss (mg/L) | 6.5 |
| tss_meth | meth_2.29 |
| turbidity (NTU) | 1.168 |
| turbidity_meth | meth_2.29 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139036 |
| utc_date_sampled | 2021-05-21 |
| utc_time_sampled | 05:50:00 |