Australian Microbiome Amplicons 18S 102.100.100/139711 J6T5V
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2020-09-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/4wcd-5z12 |
| am_environment | Marine |
| ammonium (μmol/L) | 1e-10 |
| ammonium_meth | meth_2.20 |
| amplicon | 18S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-910/ |
| bioplatforms_dataset_id | 102.100.100/401932 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0016 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-910 |
| chlorophyll_a (mg/m3) | 2.0 |
| chlorophyll_a_meth | meth_2.20 |
| collection_date | 2020-02-25T02:33:00 |
| comments | 139711_18S_J6T5V_AAGAGGCA-TCGACTAG |
| conductivity_aqueous (S/m) | 4.8 |
| conductivity_aqueous_meth | meth_2.21 |
| data_type | 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401932 |
| date_of_transfer | 2020-06-03 |
| date_of_transfer_to_archive | 2020-06-16 |
| depth (m) | 0.5 |
| depth_lower (m) | 0.5 |
| depth_upper (m) | 0.5 |
| description | MiSeq data package |
| dilution_used | neat |
| env_broad_scale | 6 Water |
| env_local_scale | 6.6.3 Estuary/coastal waters—intensive use |
| env_medium | Saline water [ENVO_00002010] |
| flow_id | J6T5V |
| folder_name | 20200603_AM_18S_UNSW_J6T5V |
| funding_agency | CSIRO; Derwent Estuary Program |
| general_env_feature | Estuarine (tidal including deltas; tidal marshes and mangrove swamps) |
| geo_loc_name | Australia:Tasmania |
| index | AAGAGGCA-TCGACTAG |
| lat_lon (decimal_degrees) | -42.874 147.3612 |
| latitude (decimal_degrees) | -42.874 |
| longitude (decimal_degrees) | 147.3612 |
| nitrate_nitrite (μmol/L) | 1e-10 |
| nitrate_nitrite_meth | meth_2.20 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | 245.95 |
| oxygen_meth | meth_2.20 |
| pass_fail | P |
| ph | 8.12 |
| ph_meth | meth_2.21 |
| phosphate (μmol/L) | 0.3 |
| phosphate_meth | meth_2.20 |
| reads | 151195.0 |
| salinity (PSU) | 31.36 |
| salinity_meth | meth_2.21 |
| samp_collect_device | meth_1.18 |
| samp_mat_process | meth_1.18 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | CSIRO; Derwent Estuary Program |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/139711 |
| sample_metadata_ingest_date | 2021-05-13 16:03:08 |
| sample_metadata_ingest_file | AWQalldata_current_to_September2020_AM_ids_square20210513_AMcurated_JVcurated_20210513_xlsx |
| sample_metadata_update_history | AMsample_curate_textField_replace_commas_with_semicolon_UPDATE_xlsx; DEP_methods_2_2_to_meth_2_20_UPDATE_xlsx; DEP_rounded_values_UPDATE_xlsx; |
| sample_site_location_description | Derwent Estuary KB |
| sample_submitter | Jodie van de Kamp |
| sample_type | Coastal water |
| secchi_depth (m) | 8.0 |
| secchi_depth_meth | meth_2.21 |
| sequencing_facility | Ramaciotti |
| source_mat_id | 102.100.100/139711 |
| store_cond | meth_1.18 |
| target | 18S |
| temp (degC) | 18.698 |
| temp_meth | meth_2.21 |
| ticket | BPAOPS-910 |
| tot_depth_water_col (m) | 11.001 |
| tss (mg/L) | 4.0 |
| tss_meth | meth_2.20 |
| turbidity (NTU) | 0.21 |
| turbidity_meth | meth_2.21 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139711 |
| utc_date_sampled | 2020-02-25 |
| utc_time_sampled | 02:33:00 |