Australian Microbiome Amplicons 18S 102.100.100/139941 J45WP

Port Hacking, 18S MiSeq

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2020-09-14
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2325.11
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.75
ammonium_meth meth_2.2
amplicon 18S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-922/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-922
collection_date 2016-06-15T01:06:00
comments 139941_18S_J45WP_GCTCATGA-GAGCCTTA
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2020-06-16
date_of_transfer_to_archive 2020-06-19
depth (m) 100.0
depth_lower (m) 100.0
depth_upper (m) 100.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id J45WP
folder_name 20200616_AM_18S_UNSW_J5JP7
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
imos_site_code NRSPHB
index GCTCATGA-GAGCCTTA
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
nitrate (μmol/L) 6.9
nitrate_meth meth_2.2
nrs_sample_code PHB20160615_100
nrs_trip_code PHB20160615
nucl_acid_ext meth_3.1.9
omics Genomics
pass_fail P
phosphate (μmol/L) 0.54
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 7014.0
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 4629.5
prochlorococcus_meth meth_2.2int
reads 151866.0
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/139941
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 17.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 2.3
silicate_meth meth_2.2
source_mat_id 102.100.100/139941
store_cond meth_1.4
synechococcus (cells/mL) 8771.0
synechococcus_meth meth_2.2int
target 18S
ticket BPAOPS-922
total_co2 (μmol/kg) 2096.3
total_co2_meth meth_2.2
tss (mg/L) 0.7
tss_meth meth_2.2int
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139941
utc_date_sampled 2016-06-15
utc_time_sampled 01:06:00
zooplankton_biomass (mg/m3) 3.7591
zooplankton_biomass_meth meth_2.2int