Australian Microbiome Amplicons 18S 102.100.100/141173 JJD2Y

Kangaroo Island, 18S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-05-31
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2365.43
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
amplicon 18S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1035/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1035
collection_date 2020-02-04T03:55:00
comments 141173_18S_JJD2Y_CTCTCTAC-TTATGCGA
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-03-02
date_of_transfer_to_archive 2021-03-02
depth (m) 100.0
depth_lower (m) 100.0
depth_upper (m) 100.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id JJD2Y
folder_name 20210302_AM_18S_UNSW_JJD2Y
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Australian Bight [GAZ:00045604]
imos_site_code NRSKAI
index CTCTCTAC-TTATGCGA
lat_lon (decimal_degrees) -35.8322 136.4473
latitude (decimal_degrees) -35.8322
longitude (decimal_degrees) 136.4473
nitrate (μmol/L) 2.6
nitrate_meth meth_2.2
nitrite (μmol/L) 0.33
nitrite_meth meth_2.2
nrs_sample_code KAI20200204_100
nrs_trip_code KAI20200204
nucl_acid_ext meth_3.1.9
omics Genomics
pass_fail P
phosphate (μmol/L) 0.32
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 27956.0
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 59027.0
prochlorococcus_meth meth_2.2int
reads 96297.0
salinity_lab (PSU) 35.92
salinity_lab_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/141173
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_metadata_update_history AODN_AM_NRS_202303010911_FullREPLACE_xlsx
sample_site_location_description Kangaroo Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sequencing_facility Ramaciotti
silicate (μmol/L) 1.4
silicate_meth meth_2.2
source_mat_id 102.100.100/141173
store_cond meth_1.4
synechococcus (cells/mL) 35782.5
synechococcus_meth meth_2.2int
target 18S
ticket BPAOPS-1035
total_co2 (μmol/kg) 2144.46
total_co2_meth meth_2.2
tss (mg/L) 2.3
tss_meth meth_2.2int
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141173
utc_date_sampled 2020-02-04
utc_time_sampled 03:55:00
zooplankton_biomass (mg/m3) 12.027
zooplankton_biomass_meth meth_2.2int