Australian Microbiome Amplicons 18S 102.100.100/141203 JJD2Y

Yongala, 18S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-05-31
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2284.64
alkalinity_meth meth_2.2
allo (mg/m3) 0.007
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.028
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
amplicon 18S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 0.003
anth_meth meth_2.2
asta (mg/m3) 0.006
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1035/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.037
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1035
chlorophyll_a (mg/m3) 0.555
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.034
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.057
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.06
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.4948
chlorophyll_ctd_meth meth_2.2
collection_date 2020-04-22T01:24:00
comments 141203_18S_JJD2Y_GTAGAGGA-AAGGCTAT
conductivity_aqueous (S/m) 5.6038
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-03-02
date_of_transfer_to_archive 2021-03-02
density (kg/m3) 1022.6376
density_meth meth_2.2
depth (m) 26.0
depth_lower (m) 26.0
depth_upper (m) 26.0
description MiSeq data package
diadino (mg/m3) 0.019
diadino_meth meth_2.2
diato (mg/m3) 0.002
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.024
dv_cphl_a_and_cphl_a (mg/m3) 0.579
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.034
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id JJD2Y
folder_name 20210302_AM_18S_UNSW_JJD2Y
fuco (mg/m3) 0.063
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Great Barrier Reef Marine Park [GAZ:00049080]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.116
hex_fuco_meth meth_2.2
imos_site_code NRSYON
index GTAGAGGA-AAGGCTAT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -19.3085 147.6184
latitude (decimal_degrees) -19.3085
longitude (decimal_degrees) 147.6184
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.003
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code YON20200422_26
nrs_trip_code YON20200422
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 189.4038
oxygen_ctd_vol_meth meth_2.2
pass_fail P
perid (mg/m3) 0.006
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 1e-10
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 4373.5
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.006
pras_meth meth_2.2
prochlorococcus (cells/mL) 4487.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 136529.0
salinity (PSU) 35.0586
salinity_lab (PSU) 35.06
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/141203
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Yongala
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 17.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 2.1
silicate_meth meth_2.2
source_mat_id 102.100.100/141203
store_cond meth_1.4
synechococcus (cells/mL) 90951.5
synechococcus_meth meth_2.2int
target 18S
temp (degC) 27.7321
temp_meth meth_2.2
ticket BPAOPS-1035
total_co2 (μmol/kg) 1973.47
total_co2_meth meth_2.2
tss (mg/L) 0.6
tss_meth meth_2.2int
turbidity (NTU) 0.5358
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141203
utc_date_sampled 2020-04-22
utc_time_sampled 01:24:00
viola (mg/m3) 0.003
viola_meth meth_2.2
zea (mg/m3) 0.073
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 55.153
zooplankton_biomass_meth meth_2.2int