Australian Microbiome Amplicons 18S 102.100.100/141236 JMDL9

Maria Island, 18S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2021-09-16
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
allo (mg/m3) 0.021
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.087
alpha_beta_car_meth meth_2.2
am_environment Marine
amplicon 18S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1096/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.02
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1096
chlorophyll_a (mg/m3) 3.174
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.143
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.638
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.085
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 1.3093
chlorophyll_ctd_meth meth_2.2
collection_date 2017-10-15T22:50:00
comments 141236_18S_JMDL9_CGTACTAG-CTAAGCCT
conductivity_aqueous (S/m) 4.0233
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.477
cphlide_a_meth meth_2.2
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-06-18
date_of_transfer_to_archive 2021-06-24
density (kg/m3) 1026.7269
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
diadino (mg/m3) 0.182
diadino_meth meth_2.2
diato (mg/m3) 0.008
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 3.174
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.143
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id JMDL9
folder_name 20210618_AM_18S_UNSW_JMDL9
fuco (mg/m3) 1.098
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.063
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
index CGTACTAG-CTAAGCCT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.015
neo_meth meth_2.2
nrs_sample_code MAI20171015_20
nrs_trip_code MAI20171015
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 289.8
oxygen_ctd_vol (mL/L) 290.4371
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.388
perid_meth meth_2.2
phide_a (mg/m3) 0.369
phide_a_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 10661.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.036
pras_meth meth_2.2
prochlorococcus (cells/mL) 820.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 89595.0
salinity (PSU) 35.0938
salinity_lab (PSU) 35.124
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/141236
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 12.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
source_mat_id 102.100.100/141236
store_cond meth_1.4
synechococcus (cells/mL) 35458.0
synechococcus_meth meth_2.2
target 18S
temp (degC) 12.1336
temp_meth meth_2.2
ticket BPAOPS-1096
turbidity (NTU) 0.6929
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/141236
utc_date_sampled 2017-10-15
utc_time_sampled 22:50:00
viola (mg/m3) 0.012
viola_meth meth_2.2
zea (mg/m3) 0.025
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 18.2427
zooplankton_biomass_meth meth_2.2int