Australian Microbiome Amplicons 18S 102.100.100/400752 K852P

Darwin, 18S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2022-05-25
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2297.89
alkalinity_meth meth_2.2
am_environment Marine
amplicon 18S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/18s/BPAOPS-1201/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1201
chlorophyll_ctd (mg/m3) 0.7846
chlorophyll_ctd_meth meth_2.2
collection_date 2021-07-27T23:05:00
comments 400752_18S_K852P_TACGCTGC-CTCTCTAT
conductivity_aqueous (S/m) 5.4655
conductivity_aqueous_meth meth_2.2
data_type 18S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2022-02-24
date_of_transfer_to_archive 2022-02-24
density (kg/m3) 1022.583
density_meth meth_2.2
depth (m) 17.0
depth_lower (m) 17.0
depth_upper (m) 17.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id K852P
folder_name 20220224_AM_18S_UNSW_K852P
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Beagle Gulf [GAZ:00051048]
imos_site_code NRSDAR
index TACGCTGC-CTCTCTAT
lat_lon (decimal_degrees) -12.4 130.768
latitude (decimal_degrees) -12.4
longitude (decimal_degrees) 130.768
nitrate (μmol/L) 0.3
nitrate_meth meth_2.2
nitrite (μmol/L) 0.29
nitrite_meth meth_2.2
nrs_sample_code DAR20210727_17
nrs_trip_code DAR20210727
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 206.3829
oxygen_ctd_vol_meth meth_2.2
pass_fail P
pcr_plate_name HOL10053_18S4_setB
phosphate (μmol/L) 0.44
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 2345.0
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 554.5
prochlorococcus_meth meth_2.2
reads 143359.0
salinity (PSU) 34.6925
salinity_lab (PSU) 34.693
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 0.7
samp_vol_we_dna_ext (L) 0.7
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400752
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Darwin
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes High biomass/particulate matter
secchi_depth (m) 1.5
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 6.4
silicate_meth meth_2.2
source_mat_id 102.100.100/400752
store_cond meth_1.4
synechococcus (cells/mL) 17047.0
synechococcus_meth meth_2.2
target 18S
temp (degC) 26.9121
temp_meth meth_2.2
ticket BPAOPS-1201
total_co2 (μmol/kg) 2009.07
total_co2_meth meth_2.2
turbidity (NTU) 17.2832
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400752
utc_date_sampled 2021-07-27
utc_time_sampled 23:05:00
zooplankton_biomass (mg/m3) 169.9305
zooplankton_biomass_meth meth_2.2int