Australian Microbiome Amplicons A16S 102.100.100/142680 K4R3N
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-02-24 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.79 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1176/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1176 |
| collection_date | 2021-07-01T12:15:00 |
| comments | 142680_A16_K4R3N_CCTAAGAC-CCTAGAGT |
| data_type | A16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| date_of_transfer | 2021-11-26 |
| date_of_transfer_to_archive | 2021-11-29 |
| depth (m) | 2.0 |
| depth_lower (m) | 2.0 |
| depth_upper (m) | 2.0 |
| description | MiSeq data package |
| dilution_used | Neat |
| env_broad_scale | Coastal water |
| env_local_scale | 7.1.1 Coastal water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | K4R3N |
| folder_name | 20211126_AM_A16S_UNSW_K4R3N |
| funding_agency | UNSW; Betty and Gordon Moore Foundation; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
| index | CCTAAGAC-CCTAGAGT |
| lat_lon (decimal_degrees) | -33.991011 151.231931 |
| latitude (decimal_degrees) | -33.991011 |
| longitude (decimal_degrees) | 151.231931 |
| microbial_abundance (cells/mL) | 789480.0 |
| nitrate_nitrite (μmol/L) | 1.0 |
| nitrate_nitrite_meth | meth_2.2 |
| nitrite (μmol/L) | 0.18 |
| nitrite_meth | meth_2.2 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| pcr_plate_name | HOL9760_HOL9761_A16S_P2 |
| phosphate (μmol/L) | 0.22 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 4715.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 1527.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 215129.0 |
| samp_collect_device | meth_1.5.1 |
| samp_mat_process | meth_1.5.1 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | UNSW; Betty and Gordon Moore Foundation; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/142680 |
| sample_metadata_ingest_date | 2023-12-12 13:58:50 |
| sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_BotanyBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Bare Island |
| sample_submitter | Torsten Thomas |
| sample_type | Coastal water |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 0.7 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/142680 |
| store_cond | meth_1.5.1 |
| synechococcus (cells/mL) | 1732.0 |
| synechococcus_meth | meth_2.2 |
| target | A16 |
| ticket | BPAOPS-1176 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/142680 |
| utc_date_sampled | 2021-07-01 |
| utc_time_sampled | 12:15:00 |