Australian Microbiome Amplicons A16S 102.100.100/400575 LFR5G
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This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
Unable to determine correct embargo period.
Data and Resources
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bh2s-3d51 |
| am_environment | Marine |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| bioplatforms_dataset_id | 102.100.100/401915 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0001 |
| biotic_relationship | Free-living |
| coastal_id | WQQ780_D0 |
| collection_date | 2023-06-22T05:13:00 |
| comments | 400575_A16_LFR5G_TGCCGTTACT-GATATATGGC |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401915 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| dilution_used | neat |
| env_broad_scale | Coastal water |
| env_local_scale | 7.1.2 Coastal water-production |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| funding_agency | AIMS; CSIRO; IMOS |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Barrier Reef [GAZ:00009717] |
| index | TGCCGTTACT-GATATATGGC |
| lat_lon (decimal_degrees) | -16.8486 145.8363 |
| latitude (decimal_degrees) | -16.8486 |
| longitude (decimal_degrees) | 145.8363 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| reads | 55604.0 |
| samp_collect_device | meth_1.5.2 |
| samp_mat_process | meth_1.5.2 |
| samp_size (L) | 1.9 |
| samp_vol_we_dna_ext (L) | 1.9 |
| sample_attribution | Great Barrier Reef Marine Monitoring Program for Inshore Water Quality; CSIRO; IMOS |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/400575 |
| sample_metadata_ingest_date | 2023-12-12 13:58:07 |
| sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_GBR_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
| sample_site_location_description | Fairlead Buoy |
| sample_submitter | AIMS - David Bourne (d.bourne@aims.gov.au); Renee Gruber (r.gruber@aims.gov.au) |
| sample_type | Coastal water |
| source_mat_id | 102.100.100/400575 |
| store_cond | meth_1.5.2 |
| target | A16 |
| ticket | BPAOPS-1562 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400575 |
| utc_date_sampled | 2023-06-22 |
| utc_time_sampled | 05:13:00 |