Australian Microbiome Amplicons A16S 102.100.100/400616 KWKCH

Hobsons; Port Phillip Bay, A16S MiSeq

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-03-19
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/bh2s-3d51
am_environment Marine
ammonium (μmol/L) 1.1423088346
ammonium_meth meth_2.29
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1355/
bioplatforms_dataset_id 102.100.100/401915
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM0001
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1355
chlorophyll_a (mg/m3) 1.6
chlorophyll_a_meth meth_2.29
coastal_id EPA VIC Site_Id 1991
collection_date 2022-03-17T00:30:00
comments 400616_A16_KWKCH_CGTACTAG-CTATTAAG
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401915
date_of_transfer 2022-12-19
date_of_transfer_to_archive 2022-12-19
depth (m) 2.0
depth_lower (m) 2.0
depth_upper (m) 2.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.1.3 Coastal water-intensive use
env_medium Saline water [ENVO_00002010]
flow_id KWKCH
fluor (AU) 1.9264
fluor_meth meth_2.29
folder_name 20221216_AM_A16S_UNSW_KWKCH
funding_agency Environment Protection Agency Victoria; Deakin University; CSIRO; IMOS
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Port Phillip Bay [GAZ:00045304]
index CGTACTAG-CTATTAAG
lat_lon (decimal_degrees) -37.87019 144.933807
latitude (decimal_degrees) -37.87019
longitude (decimal_degrees) 144.933807
nitrate_nitrite (μmol/L) 0.9995202303
nitrate_nitrite_meth meth_2.29
nitrite (μmol/L) 0.1427886043
nitrite_meth meth_2.29
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 203.4814675917
oxygen_meth meth_2.29
par (μmol/m2/s) 297.41
par_meth meth_2.29
pass_fail P
pcr_plate_name HOL11285-11286_A16S
ph 8.069
ph_meth meth_2.29
phosphate (μmol/L) 1.9371234272
phosphate_meth meth_2.29
reads 196106.0
salinity (PSU) 33.8921
salinity_meth meth_2.29
samp_collect_device meth_1.5.1
samp_mat_process meth_1.5.1
sample_attribution Deakin University; CSIRO; IMOS
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400616
sample_metadata_ingest_date 2023-12-12 13:58:30
sample_metadata_ingest_file Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_PortPhillipBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx
sample_site_location_description Hobsons; Port Phillip Bay
sample_submitter Deakin University - Craig Sherman (craig.sherman@deakin.edu.au)
sample_type Coastal water
secchi_depth (m) 4.0
secchi_depth_meth meth_2.29
sequencing_facility Ramaciotti
silicate (μmol/L) 5.3262316911
silicate_meth meth_2.29
source_mat_id 102.100.100/400616
store_cond meth_1.5.1
target A16
temp (degC) 20.8303
temp_meth meth_2.29
ticket BPAOPS-1355
tss (mg/L) 2.4
tss_meth meth_2.29
turbidity (NTU) 1.1254
turbidity_meth meth_2.29
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400616
utc_date_sampled 2022-03-17
utc_time_sampled 00:30:00