Australian Microbiome Amplicons A16S 102.100.100/400631 KWKCH

Long Reef; Port Phillip Bay, A16S MiSeq

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-03-19
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/bh2s-3d51
am_environment Marine
ammonium (μmol/L) 0.5711544173
ammonium_meth meth_2.29
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1355/
bioplatforms_dataset_id 102.100.100/401915
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM0001
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1355
chlorophyll_a (mg/m3) 0.8
chlorophyll_a_meth meth_2.29
coastal_id EPA VIC Site_Id 369
collection_date 2022-05-24T04:48:00
comments 400631_A16_KWKCH_AGGCAGAA-TTCTAGCT
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401915
date_of_transfer 2022-12-19
date_of_transfer_to_archive 2022-12-19
depth (m) 2.0
depth_lower (m) 2.0
depth_upper (m) 2.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.1.3 Coastal water-intensive use
env_medium Saline water [ENVO_00002010]
flow_id KWKCH
fluor (AU) 0.9868
fluor_meth meth_2.29
folder_name 20221216_AM_A16S_UNSW_KWKCH
funding_agency Environment Protection Agency Victoria; Deakin University; CSIRO; IMOS
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Port Phillip Bay [GAZ:00045304]
index AGGCAGAA-TTCTAGCT
lat_lon (decimal_degrees) -38.02932 144.592819
latitude (decimal_degrees) -38.02932
longitude (decimal_degrees) 144.592819
nitrate_nitrite (μmol/L) 0.9995202303
nitrate_nitrite_meth meth_2.29
nitrite (μmol/L) 0.2141829065
nitrite_meth meth_2.29
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 268.3605225327
oxygen_meth meth_2.29
par (μmol/m2/s) 467.84
par_meth meth_2.29
pass_fail P
pcr_plate_name HOL11285-11286_A16S
ph 8.13
ph_meth meth_2.29
phosphate (μmol/L) 3.8742468545
phosphate_meth meth_2.29
reads 222581.0
salinity (PSU) 35.5451
salinity_meth meth_2.29
samp_collect_device meth_1.5.1
samp_mat_process meth_1.5.1
sample_attribution Deakin University; CSIRO; IMOS
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400631
sample_metadata_ingest_date 2023-12-12 13:58:30
sample_metadata_ingest_file Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_PortPhillipBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx
sample_site_location_description Long Reef; Port Phillip Bay
sample_submitter Deakin University - Craig Sherman (craig.sherman@deakin.edu.au)
sample_type Coastal water
secchi_depth (m) 6.5
secchi_depth_meth meth_2.29
sequencing_facility Ramaciotti
silicate (μmol/L) 4.9933422104
silicate_meth meth_2.29
source_mat_id 102.100.100/400631
store_cond meth_1.5.1
target A16
temp (degC) 13.4352
temp_meth meth_2.29
ticket BPAOPS-1355
tss (mg/L) 6.3
tss_meth meth_2.29
turbidity (NTU) 0.4291
turbidity_meth meth_2.29
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400631
utc_date_sampled 2022-05-24
utc_time_sampled 04:48:00