Australian Microbiome Amplicons A16S 102.100.100/400718 K4HNM

Port Hacking, A16S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2022-02-24
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
am_environment Marine
ammonium (μmol/L) 0.94
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1175/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1175
chlorophyll_ctd (mg/m3) 3.1681
chlorophyll_ctd_meth meth_2.2
collection_date 2018-11-20T22:24:00
comments 400718_A16_K4HNM_AAGAGGCA-TTCTAGCT
conductivity_aqueous (S/m) 4.7631
conductivity_aqueous_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2021-11-26
date_of_transfer_to_archive 2021-11-29
density (kg/m3) 1025.3409
density_meth meth_2.2
depth (m) 10.0
depth_lower (m) 10.0
depth_upper (m) 10.0
description MiSeq data package
dilution_used Neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id K4HNM
folder_name 20211123_AM_A16S_UNSW_K4HNM
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
imos_site_code NRSPHB
index AAGAGGCA-TTCTAGCT
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
nitrate (μmol/L) 0.8
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code PHB20181120_10
nrs_trip_code PHB20181120
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 223.3095
oxygen_ctd_vol_meth meth_2.2
pass_fail P
pcr_plate_name HOL9760_A16S_P1
phosphate (μmol/L) 0.26
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 18908.5
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 623.5
prochlorococcus_meth meth_2.2
reads 231196.0
salinity (PSU) 35.4728
salinity_lab (PSU) 35.482
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400718
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 13.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.8
silicate_meth meth_2.2
source_mat_id 102.100.100/400718
store_cond meth_1.4
synechococcus (cells/mL) 2002.5
synechococcus_meth meth_2.2
target A16
temp (degC) 19.1537
temp_meth meth_2.2
ticket BPAOPS-1175
turbidity (NTU) 0.0255
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400718
utc_date_sampled 2018-11-20
utc_time_sampled 22:24:00
zooplankton_biomass (mg/m3) 4.8129
zooplankton_biomass_meth meth_2.2int