Australian Microbiome Amplicons A16S 102.100.100/400784 K9KNC

Rottnest Island, A16S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2022-06-05
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2352.54
alkalinity_meth meth_2.2
am_environment Marine
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1207/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1207
chlorophyll_ctd (mg/m3) 0.4418
chlorophyll_ctd_meth meth_2.2
collection_date 2021-02-24T00:33:00
comments 400784_A16_K9KNC_TGCAGCTA-TTCTAGCT
conductivity_aqueous (S/m) 5.1074
conductivity_aqueous_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2022-03-07
date_of_transfer_to_archive 2022-03-08
density (kg/m3) 1025.198
density_meth meth_2.2
depth (m) 47.0
depth_lower (m) 47.0
depth_upper (m) 47.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id K9KNC
folder_name 20220307_AM_A16S_UNSW_K9KNC
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ:00051147]
imos_site_code NRSROT
index TGCAGCTA-TTCTAGCT
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
nrs_sample_code ROT20210224_47
nrs_trip_code ROT20210224
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 200.0
oxygen_ctd_vol_meth meth_2.2
pass_fail P
pcr_plate_name HOL10053_A16S
picoeukaryotes (cells/mL) 8337.5
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 3661.0
prochlorococcus_meth meth_2.2
reads 229618.0
salinity (PSU) 35.9744
salinity_lab (PSU) 35.97
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400784
sample_integrity_warnings WARNING: Samples not filtered on day of collection (filtered 20210225)
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_metadata_update_history NRS_controlledVocab_UPDATE_xlsx;
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 17.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
source_mat_id 102.100.100/400784
store_cond meth_1.4
synechococcus (cells/mL) 42977.0
synechococcus_meth meth_2.2
target A16
temp (degC) 21.8636
temp_meth meth_2.2
ticket BPAOPS-1207
total_co2 (μmol/kg) 2057.22
total_co2_meth meth_2.2
turbidity (NTU) 0.1122
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400784
utc_date_sampled 2021-02-24
utc_time_sampled 00:33:00
zooplankton_biomass (mg/m3) 17.0529
zooplankton_biomass_meth meth_2.2int