Australian Microbiome Amplicons A16S 102.100.100/400865 KWKCH

Port Hacking, A16S MiSeq

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This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-03-19
Access Control Mode date
Sequence Data Type illumina-amplicons
Related Data doi:10.25953/z3tc-a185
alkalinity (μmol/kg) 2119.2
alkalinity_meth meth_2.2
allo (mg/m3) 0.013
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.051
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.11
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 0.004
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1355/
bioplatforms_dataset_id 102.100.100/401949
bioplatforms_project Australian Microbiome Initiative (AM)
bioplatforms_project_code AM_NRS
biotic_relationship Free-living
but_fuco (mg/m3) 0.006
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1355
chlorophyll_a (mg/m3) 1.053
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.095
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.145
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.009
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.9539
chlorophyll_ctd_meth meth_2.2
collection_date 2022-03-16T21:00:00
comments 400865_A16_KWKCH_CGAGGCTG-AAGGCTAT
conductivity_aqueous (S/m) 4.8295
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.325
cphlide_a_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
dataset_id 102.100.100/401949
date_of_transfer 2022-12-19
date_of_transfer_to_archive 2022-12-19
density (kg/m3) 1021.4187
density_meth meth_2.2
depth (m) 0.0
depth_lower (m) 0.0
depth_upper (m) 0.0
description MiSeq data package
diadino (mg/m3) 0.066
diadino_meth meth_2.2
diato (mg/m3) 0.004
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 1.053
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.095
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id KWKCH
folder_name 20221216_AM_A16S_UNSW_KWKCH
fuco (mg/m3) 0.4
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.026
hex_fuco_meth meth_2.2
imos_site_code NRSPHB
index CGAGGCTG-AAGGCTAT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
lut (mg/m3) 0.005
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.017
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code PHB20220316_0
nrs_trip_code PHB20220316
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 211.9797
oxygen_ctd_vol_meth meth_2.2
pass_fail P
pcr_plate_name HOL11285-11286_A16S
perid (mg/m3) 0.022
perid_meth meth_2.2
phide_a (mg/m3) 0.09
phide_a_meth meth_2.2
phosphate (μmol/L) 0.05
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 28176.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.039
pras_meth meth_2.2
prochlorococcus (cells/mL) 51006.5
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 227701.0
salinity (PSU) 32.099
salinity_lab (PSU) 31.724
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 2.0
samp_vol_we_dna_ext (L) 2.0
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/400865
sample_metadata_ingest_date 2022-11-29 17:13:14
sample_metadata_ingest_file AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx
sample_metadata_update_history AODN_AM_NRS_202303010911_FullREPLACE_xlsx
sample_site_location_description Port Hacking
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes Other - not recorded in field log sheets [assume 2 L as per protocol]
secchi_depth (m) 8.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 7.0
silicate_meth meth_2.2
source_mat_id 102.100.100/400865
store_cond meth_1.4
synechococcus (cells/mL) 101682.5
synechococcus_meth meth_2.2
target A16
temp (degC) 24.1299
temp_meth meth_2.2
ticket BPAOPS-1355
total_co2 (μmol/kg) 1880.65
total_co2_meth meth_2.2
tss (mg/L) 2.4
tss_meth meth_2.2
turbidity (NTU) 0.3354
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400865
utc_date_sampled 2022-03-16
utc_time_sampled 21:00:00
viola (mg/m3) 0.007
viola_meth meth_2.2
zea (mg/m3) 0.062
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 2.8184
zooplankton_biomass_meth meth_2.2int