Australian Microbiome Amplicons A16S 102.100.100/400888 KWKCH
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2023-03-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/z3tc-a185 |
| alkalinity (μmol/kg) | 2318.5 |
| alkalinity_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (μmol/L) | 1e-10 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1355/ |
| bioplatforms_dataset_id | 102.100.100/401949 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM_NRS |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1355 |
| chlorophyll_ctd (mg/m3) | 0.5189 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2022-02-16T22:45:00 |
| comments | 400888_A16_KWKCH_GCTCATGA-CTATTAAG |
| conductivity_aqueous (S/m) | 4.2724 |
| conductivity_aqueous_meth | meth_2.2 |
| data_type | A16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401949 |
| date_of_transfer | 2022-12-19 |
| date_of_transfer_to_archive | 2022-12-19 |
| density (kg/m3) | 1026.5623 |
| density_meth | meth_2.2 |
| depth (m) | 100.0 |
| depth_lower (m) | 100.0 |
| depth_upper (m) | 100.0 |
| description | MiSeq data package |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | KWKCH |
| folder_name | 20221216_AM_A16S_UNSW_KWKCH |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:East Australian Current [GAZ:00000352] |
| imos_site_code | NRSPHB |
| index | GCTCATGA-CTATTAAG |
| lat_lon (decimal_degrees) | -34.1192 151.2267 |
| latitude (decimal_degrees) | -34.1192 |
| longitude (decimal_degrees) | 151.2267 |
| nitrate (μmol/L) | 14.2 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.17 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | PHB20220216_100 |
| nrs_trip_code | PHB20220216 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen_ctd_vol (mL/L) | 83.1606 |
| oxygen_ctd_vol_meth | meth_2.2 |
| pass_fail | P |
| pcr_plate_name | HOL11285-11286_A16S |
| phosphate (μmol/L) | 0.95 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 3608.5 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 7989.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 239314.0 |
| salinity (PSU) | 35.2315 |
| salinity_lab (PSU) | 35.251 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| samp_size (L) | 2.0 |
| samp_vol_we_dna_ext (L) | 2.0 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/400888 |
| sample_metadata_ingest_date | 2022-11-29 17:13:14 |
| sample_metadata_ingest_file | AODN_AM_NRS_ALL_to_SEP2022_202211291332_GOLD_FullREPLACE_xlsx |
| sample_site_location_description | Port Hacking |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| sample_volume_notes | Other - not recorded in field log sheets [assume 2 L as per protocol] |
| secchi_depth (m) | 13.0 |
| secchi_depth_meth | meth_2.2 |
| sequencing_facility | Ramaciotti |
| silicate (μmol/L) | 5.9 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/400888 |
| store_cond | meth_1.4 |
| synechococcus (cells/mL) | 1195.0 |
| synechococcus_meth | meth_2.2 |
| target | A16 |
| temp (degC) | 14.5161 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1355 |
| total_co2 (μmol/kg) | 2141.23 |
| total_co2_meth | meth_2.2 |
| turbidity (NTU) | 0.2298 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/400888 |
| utc_date_sampled | 2022-02-16 |
| utc_time_sampled | 22:45:00 |
| zooplankton_biomass (mg/m3) | 19.7044 |
| zooplankton_biomass_meth | meth_2.2int |