Australian Microbiome Amplicons A16S 102.100.100/402293 LFR5G
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This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
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Data and Resources
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Data Policy
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Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
Access Control Reason | Unable to determine correct embargo period. |
Access Control Mode | closed |
Sequence Data Type | illumina-amplicons |
Related Data | doi:10.25953/bh2s-3d51 |
am_environment | Marine |
amplicon | A16S |
analysis_software | MiSeq Reporter |
analysis_software_version | 2.6.2.3 |
analytical_platform | MiSeq |
base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
bioplatforms_dataset_id | 102.100.100/401915 |
bioplatforms_project | Australian Microbiome Initiative (AM) |
bioplatforms_project_code | AM0001 |
biotic_relationship | Free-living |
collection_date | 2023-06-15T01:57:00 |
comments | 402293_A16_LFR5G_AGGTATGAGA-ACAAGAGTTC |
database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
dataset_id | 102.100.100/401915 |
depth (m) | 2.0 |
depth_lower (m) | 2.0 |
depth_upper (m) | 2.0 |
dilution_used | neat |
dna_concentration_submitter (ng/μL) | 11.6 |
dna_concentration_submitter_meth | meth_3.3.3 |
env_broad_scale | Coastal water |
env_local_scale | Coastal water - intensive use |
env_medium | Sea water [ENVO_00002149] |
flow_id | LFR5G |
funding_agency | UTS; CRC food agility; CSIRO; IMOS |
general_env_feature | Marine - neritic (coastal off shore) |
geo_loc_name | Australia:Botany Bay [GAZ:00002797] |
index | AGGTATGAGA-ACAAGAGTTC |
lat_lon (decimal_degrees) | -34.00681 151.1921 |
latitude (decimal_degrees) | -34.00681 |
longitude (decimal_degrees) | 151.1921 |
nucl_acid_ext | meth_3.1.9 |
omics | Genomics |
pass_fail | P |
reads | 101255.0 |
samp_collect_device | meth_1.5.1 |
samp_mat_process | meth_1.5.1 |
samp_size (L) | 2.0 |
samp_vol_we_dna_ext (L) | 2.0 |
sample_attribution | UTS; CRC food agility; CSIRO; IMOS |
sample_database_file | AM_db_v4.2_202402091224.db |
sample_id | 102.100.100/402293 |
sample_metadata_ingest_date | 2023-12-12 13:58:50 |
sample_metadata_ingest_file | Sample_Submission_sheet_20230411_schema_v3_vocab_3_0_0_BotanyBay_Y1Y2Y3_FullREPLACE_FullREPLACE_FullREPLACE_FullREPLACE_xlsx |
sample_site_location_description | Towra Point |
sample_submitter | Shauna Murray; Matt Tesoriero |
sample_type | Coastal water |
source_mat_id | 102.100.100/402293 |
store_cond | meth_1.5.1 |
target | A16 |
ticket | BPAOPS-1562 |
url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/402293 |
utc_date_sampled | 2023-06-15 |
utc_time_sampled | 01:57:00 |