Australian Microbiome Amplicons A16S 102.100.100/402867 L2PTG

Darwin, A16S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-10-03
Access Control Mode date
Sequence Data Type illumina-amplicons
alkalinity (μmol/kg) 2205.26
alkalinity_meth meth_2.2
allo (mg/m3) 0.015
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.041
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.2
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 0.022
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1430/230623_AM_A16_UNSW_L2PTG/
biotic_relationship Free-living
but_fuco (mg/m3) 0.011
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1430
chlorophyll_a (mg/m3) 0.646
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.041
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 0.03
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.054
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.016
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.8264
chlorophyll_ctd_meth meth_2.2
collection_date 2023-02-22T22:10:00
comments 402867_A16_L2PTG_GATATTGTGT-ACCACACGGT
conductivity_aqueous (S/m) 5.5782
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 1e-10
cphlide_a_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2023-07-05
date_of_transfer_to_archive 2023-07-21
density (kg/m3) 1020.444
density_meth meth_2.2
depth (m) 18.0
depth_lower (m) 18.0
depth_upper (m) 18.0
description MiSeq data package
diadino (mg/m3) 0.02
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used NEAT
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 1e-10
dv_cphl_a_and_cphl_a (mg/m3) 0.646
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.041
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id L2PTG
folder_name 230623_AM_A16_UNSW_L2PTG
fuco (mg/m3) 0.259
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Beagle Gulf [GAZ:00051048]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.014
hex_fuco_meth meth_2.2
imos_site_code NRSDAR
index GATATTGTGT-ACCACACGGT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -12.4 130.768
latitude (decimal_degrees) -12.4
longitude (decimal_degrees) 130.768
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.004
neo_meth meth_2.2
nitrate (μmol/L) 0.9
nitrate_meth meth_2.2
nitrite (μmol/L) 1.01
nitrite_meth meth_2.2
nrs_sample_code DAR20230222_18
nrs_trip_code DAR20230222
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 168.419
oxygen_ctd_vol_meth meth_2.2
pass_fail P
perid (mg/m3) 1e-10
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.48
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
pras (mg/m3) 0.019
pras_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 195332.0
salinity (PSU) 33.2192
salinity_lab (PSU) 33.145
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
samp_size (L) 0.7
samp_vol_we_dna_ext (L) 0.7
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/402867
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Darwin
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
sample_volume_notes High biomass/particulate matter
secchi_depth (m) 0.8
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 8.2
silicate_meth meth_2.2
source_mat_id 102.100.100/402867
store_cond meth_1.4
target A16
temp (degC) 30.0607
temp_meth meth_2.2
ticket BPAOPS-1430
total_co2 (μmol/kg) 1939.96
total_co2_meth meth_2.2
turbidity (NTU) 29.3327
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/402867
utc_date_sampled 2023-02-22
utc_time_sampled 22:10:00
viola (mg/m3) 0.001
viola_meth meth_2.2
zea (mg/m3) 0.07
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 52.3375
zooplankton_biomass_meth meth_2.2int