Australian Microbiome Amplicons A16S 102.100.100/402908 L79VV

North Stradbroke Island, A16S MiSeq

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-11-20
Access Control Mode date
Sequence Data Type illumina-amplicons
allo (mg/m3) 1e-10
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.021
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.1
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 0.003
anth_meth meth_2.2
asta (mg/m3) 0.004
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1465/230804_AM_A16_UNSW_L79VV/
biotic_relationship Free-living
but_fuco (mg/m3) 0.01
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1465
chlorophyll_a (mg/m3) 0.22
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.02
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.023
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.018
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.8324
chlorophyll_ctd_meth meth_2.2
collection_date 2021-01-19T01:00:00
comments 402908_A16_L79VV_GAAGCGGCAC-CGGCTCTACT
conductivity_aqueous (S/m) 5.4999
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.008
cphlide_a_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2023-08-22
date_of_transfer_to_archive 2023-08-22
density (kg/m3) 1023.0146
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
diadino (mg/m3) 0.007
diadino_meth meth_2.2
diato (mg/m3) 0.003
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.061
dv_cphl_a_and_cphl_a (mg/m3) 0.281
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 0.005
dv_cphl_b_and_cphl_b (mg/m3) 0.025
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id L79VV
folder_name 230804_AM_A16_UNSW_L79J5
fuco (mg/m3) 0.014
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Moreton Bay Marine Park [GAZ:00088305]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.042
hex_fuco_meth meth_2.2
imos_site_code NRSNSI
index GAAGCGGCAC-CGGCTCTACT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -27.345 153.562
latitude (decimal_degrees) -27.345
longitude (decimal_degrees) 153.562
lut (mg/m3) 0.004
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.003
neo_meth meth_2.2
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code NSI20210119_20
nrs_trip_code NSI20210119
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 202.9748
oxygen_ctd_vol_meth meth_2.2
pass_fail P
perid (mg/m3) 0.003
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.08
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 33615.0
picoeukaryotes_meth meth_2.2int
pras (mg/m3) 0.002
pras_meth meth_2.2
prochlorococcus (cells/mL) 47336.0
prochlorococcus_meth meth_2.2int
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 120843.0
salinity (PSU) 35.1803
salinity_lab (PSU) 35.14
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/402908
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description North Stradbroke Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 20.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.9
silicate_meth meth_2.2
source_mat_id 102.100.100/402908
store_cond meth_1.4
synechococcus (cells/mL) 55009.5
synechococcus_meth meth_2.2int
target A16
temp (degC) 26.592
temp_meth meth_2.2
ticket BPAOPS-1465
tss (mg/L) 0.4
tss_meth meth_2.2int
turbidity (NTU) 0.2907
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/402908
utc_date_sampled 2021-01-19
utc_time_sampled 01:00:00
viola (mg/m3) 0.002
viola_meth meth_2.2
zea (mg/m3) 0.079
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 27.8308
zooplankton_biomass_meth meth_2.2int