Australian Microbiome Amplicons A16S 102.100.100/402976 L79VV

Maria Island, A16S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-11-20
Access Control Mode date
Sequence Data Type illumina-amplicons
alkalinity (μmol/kg) 2320.32
alkalinity_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.26
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1465/230804_AM_A16_UNSW_L79VV/
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1465
chlorophyll_ctd (mg/m3) 1.3483
chlorophyll_ctd_meth meth_2.2
collection_date 2020-09-28T23:00:00
comments 402976_A16_L79VV_ACCGTTACAA-CTCATAGCGA
conductivity_aqueous (S/m) 4.0226
conductivity_aqueous_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2023-08-22
date_of_transfer_to_archive 2023-08-22
density (kg/m3) 1026.9675
density_meth meth_2.2
depth (m) 50.0
depth_lower (m) 50.0
depth_upper (m) 50.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id L79VV
folder_name 230804_AM_A16_UNSW_L79J5
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
imos_site_code NRSMAI
index ACCGTTACAA-CTCATAGCGA
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
nitrate (μmol/L) 2.2
nitrate_meth meth_2.2
nitrite (μmol/L) 0.17
nitrite_meth meth_2.2
nrs_sample_code MAI20200928_50
nrs_trip_code MAI20200928
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 283.4
oxygen_ctd_vol (mL/L) 283.2499
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.34
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 15516.0
picoeukaryotes_meth meth_2.2int
prochlorococcus (cells/mL) 106.5
prochlorococcus_meth meth_2.2int
reads 120285.0
salinity (PSU) 35.1985
salinity_lab (PSU) 35.192
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/402976
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 16.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.3
silicate_meth meth_2.2
source_mat_id 102.100.100/402976
store_cond meth_1.4
synechococcus (cells/mL) 20472.0
synechococcus_meth meth_2.2int
target A16
temp (degC) 12.0011
temp_meth meth_2.2
ticket BPAOPS-1465
total_co2 (μmol/kg) 2097.84
total_co2_meth meth_2.2
turbidity (NTU) 0.7601
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/402976
utc_date_sampled 2020-09-28
utc_time_sampled 23:00:00
zooplankton_biomass (mg/m3) 4.9933
zooplankton_biomass_meth meth_2.2int