Australian Microbiome Amplicons A16S 102.100.100/402993 L79VV

Maria Island, A16S MiSeq

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-11-20
Access Control Mode date
Sequence Data Type illumina-amplicons
allo (mg/m3) 0.005
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.008
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 1e-10
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1465/230804_AM_A16_UNSW_L79VV/
biotic_relationship Free-living
but_fuco (mg/m3) 0.013
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
ccg_jira_ticket BPAOPS-1465
chlorophyll_a (mg/m3) 0.195
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.028
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.029
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.024
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.1815
chlorophyll_ctd_meth meth_2.2
collection_date 2022-03-27T23:11:00
comments 402993_A16_L79VV_ATGGCGCCTG-TCCACGGCCT
conductivity_aqueous (S/m) 4.6537
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.005
cphlide_a_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2023-08-22
date_of_transfer_to_archive 2023-08-22
density (kg/m3) 1025.7786
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
description MiSeq data package
diadino (mg/m3) 0.009
diadino_meth meth_2.2
diato (mg/m3) 1e-10
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.015
dv_cphl_a_and_cphl_a (mg/m3) 0.21
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.028
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id L79VV
folder_name 230804_AM_A16_UNSW_L79J5
fuco (mg/m3) 0.018
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.037
hex_fuco_meth meth_2.2
imos_site_code NRSMAI
index ATGGCGCCTG-TCCACGGCCT
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -42.5967 148.2333
latitude (decimal_degrees) -42.5967
longitude (decimal_degrees) 148.2333
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.004
neo_meth meth_2.2
nitrate (μmol/L) 0.2
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code MAI20220327_20
nrs_trip_code MAI20220327
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 228.1
oxygen_ctd_vol (mL/L) 240.4629
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.018
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.09
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 16275.0
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.01
pras_meth meth_2.2
prochlorococcus (cells/mL) 26971.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 225176.0
salinity (PSU) 35.5441
salinity_lab (PSU) 35.543
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/402993
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Maria Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 19.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 0.7
silicate_meth meth_2.2
source_mat_id 102.100.100/402993
store_cond meth_1.4
synechococcus (cells/mL) 24040.5
synechococcus_meth meth_2.2
target A16
temp (degC) 17.9938
temp_meth meth_2.2
ticket BPAOPS-1465
turbidity (NTU) 0.6641
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/402993
utc_date_sampled 2022-03-27
utc_time_sampled 23:11:00
viola (mg/m3) 0.004
viola_meth meth_2.2
zea (mg/m3) 0.018
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 8.7371
zooplankton_biomass_meth meth_2.2int