Australian Microbiome Amplicons A16S 102.100.100/403282 L79J5

Port Hacking, A16S MiSeq

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-11-19
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Marine
ammonium (μmol/L) 0.23
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1464/230804_AM_A16_UNSW_L79J5/
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1464
chlorophyll_ctd (mg/m3) 4.0766
chlorophyll_ctd_meth meth_2.2
collection_date 2022-11-14T21:22:00
comments 403282_A16_L79J5_GATCGGATAA-GTATCGGCCG
conductivity_aqueous (S/m) 4.5632
conductivity_aqueous_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2023-08-21
date_of_transfer_to_archive 2023-08-22
density (kg/m3) 1025.9468
density_meth meth_2.2
depth (m) 25.0
depth_lower (m) 25.0
depth_upper (m) 25.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id L79J5
folder_name 230804_AM_A16_UNSW_L79J5
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
imos_site_code NRSPHB
index GATCGGATAA-GTATCGGCCG
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
nitrate (μmol/L) 7.8
nitrate_meth meth_2.2
nitrite (μmol/L) 0.76
nitrite_meth meth_2.2
nrs_sample_code PHB20221114_25
nrs_trip_code PHB20221114
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 180.1706
oxygen_ctd_vol_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.62
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 11551.0
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 2644.0
prochlorococcus_meth meth_2.2
reads 88345.0
salinity (PSU) 35.4843
salinity_lab (PSU) 35.486
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/403282
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Port Hacking
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 7.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 2.2
silicate_meth meth_2.2
source_mat_id 102.100.100/403282
store_cond meth_1.4
synechococcus (cells/mL) 2270.0
synechococcus_meth meth_2.2
target A16
temp (degC) 17.1668
temp_meth meth_2.2
ticket BPAOPS-1464
turbidity (NTU) 0.1139
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403282
utc_date_sampled 2022-11-14
utc_time_sampled 21:22:00
zooplankton_biomass (mg/m3) 5.7783
zooplankton_biomass_meth meth_2.2int