Australian Microbiome Amplicons A16S 102.100.100/403284 L79J5

Port Hacking, A16S MiSeq

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Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
Access Control Date 2023-11-19
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Marine
ammonium (μmol/L) 1e-10
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1464/230804_AM_A16_UNSW_L79J5/
biotic_relationship Free-living
ccg_jira_ticket BPAOPS-1464
chlorophyll_ctd (mg/m3) 20.1898
chlorophyll_ctd_meth meth_2.2
collection_date 2023-01-11T21:27:00
comments 403284_A16_L79J5_AGCTACTATA-GTTATATGGC
conductivity_aqueous (S/m) 4.8392
conductivity_aqueous_meth meth_2.2
data_type A16S
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2023-08-21
date_of_transfer_to_archive 2023-08-22
density (kg/m3) 1025.3073
density_meth meth_2.2
depth (m) 25.0
depth_lower (m) 25.0
depth_upper (m) 25.0
description MiSeq data package
dilution_used neat
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id L79J5
folder_name 230804_AM_A16_UNSW_L79J5
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:East Australian Current [GAZ:00000352]
imos_site_code NRSPHB
index AGCTACTATA-GTTATATGGC
lat_lon (decimal_degrees) -34.1192 151.2267
latitude (decimal_degrees) -34.1192
longitude (decimal_degrees) 151.2267
nitrate (μmol/L) 1e-10
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code PHB20230111_25
nrs_trip_code PHB20230111
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen_ctd_vol (mL/L) 248.1669
oxygen_ctd_vol_meth meth_2.2
pass_fail P
phosphate (μmol/L) 0.07
phosphate_meth meth_2.2
picoeukaryotes (cells/mL) 10860.5
picoeukaryotes_meth meth_2.2
prochlorococcus (cells/mL) 7977.0
prochlorococcus_meth meth_2.2
reads 78173.0
salinity (PSU) 35.5658
salinity_lab (PSU) 35.532
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/403284
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Port Hacking
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 22.0
secchi_depth_meth meth_2.2
sequencing_facility Ramaciotti
silicate (μmol/L) 1e-10
silicate_meth meth_2.2
source_mat_id 102.100.100/403284
store_cond meth_1.4
synechococcus (cells/mL) 43588.0
synechococcus_meth meth_2.2
target A16
temp (degC) 19.7799
temp_meth meth_2.2
ticket BPAOPS-1464
turbidity (NTU) 0.1579
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403284
utc_date_sampled 2023-01-11
utc_time_sampled 21:27:00
zooplankton_biomass (mg/m3) 8.2927
zooplankton_biomass_meth meth_2.2int