Australian Microbiome Amplicons A16S 102.100.100/403625 LFR5G

Rottnest Island, MiSeq

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Resource Permissions organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members
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Access Control Mode closed
Sequence Data Type illumina-amplicons
allo (mg/m3) 0.016
allo_meth meth_2.2
alpha_beta_car (mg/m3) 0.021
alpha_beta_car_meth meth_2.2
am_environment Marine
ammonium (μmol/L) 0.12
ammonium_meth meth_2.2
amplicon A16S
analysis_software MiSeq Reporter
analysis_software_version 2.6.2.3
analytical_platform MiSeq
anth (mg/m3) 0.004
anth_meth meth_2.2
asta (mg/m3) 1e-10
asta_meth meth_2.2
base_url https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/
biotic_relationship Free-living
but_fuco (mg/m3) 0.024
but_fuco_meth meth_2.2
cantha (mg/m3) 1e-10
cantha_meth meth_2.2
chlorophyll_a (mg/m3) 0.451
chlorophyll_a_meth meth_2.2
chlorophyll_b (mg/m3) 0.081
chlorophyll_b_meth meth_2.2
chlorophyll_c1 (mg/m3) 1e-10
chlorophyll_c1_meth meth_2.2
chlorophyll_c2 (mg/m3) 0.056
chlorophyll_c2_meth meth_2.2
chlorophyll_c3 (mg/m3) 0.042
chlorophyll_c3_meth meth_2.2
chlorophyll_ctd (mg/m3) 0.0377
chlorophyll_ctd_meth meth_2.2
collection_date 2023-05-15T01:10:00
comments 403625_A16_LFR5G_CTGCAGATCG-GACAGTCCAC
conductivity_aqueous (S/m) 4.9991
conductivity_aqueous_meth meth_2.2
cphlide_a (mg/m3) 0.012
cphlide_a_meth meth_2.2
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
density (kg/m3) 1024.6995
density_meth meth_2.2
depth (m) 20.0
depth_lower (m) 20.0
depth_upper (m) 20.0
diadino (mg/m3) 0.022
diadino_meth meth_2.2
diato (mg/m3) 0.003
diato_meth meth_2.2
dilution_used neat
dino (mg/m3) 1e-10
dino_meth meth_2.2
dv_cphl_a (mg/m3) 0.021
dv_cphl_a_and_cphl_a (mg/m3) 0.472
dv_cphl_a_and_cphl_a_meth meth_2.2
dv_cphl_a_meth meth_2.2
dv_cphl_b (mg/m3) 1e-10
dv_cphl_b_and_cphl_b (mg/m3) 0.081
dv_cphl_b_and_cphl_b_meth meth_2.2
dv_cphl_b_meth meth_2.2
echin (mg/m3) 1e-10
echin_meth meth_2.2
env_broad_scale 7 Other
env_local_scale 7.2.1 Open ocean water-conservation
env_medium Sea water [ENVO_00002149]
flow_id LFR5G
fuco (mg/m3) 0.041
fuco_meth meth_2.2
funding_agency IMOS|CSIRO
general_env_feature Marine - neritic (coastal off shore)
geo_loc_name Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ:00051147]
gyro (mg/m3) 1e-10
gyro_meth meth_2.2
hex_fuco (mg/m3) 0.064
hex_fuco_meth meth_2.2
imos_site_code NRSROT
index CTGCAGATCG-GACAGTCCAC
keto_hex_fuco (mg/m3) 1e-10
keto_hex_fuco_meth meth_2.2
lat_lon (decimal_degrees) -32.0 115.4167
latitude (decimal_degrees) -32.0
longitude (decimal_degrees) 115.4167
lut (mg/m3) 1e-10
lut_meth meth_2.2
mg_dvp (mg/m3) 1e-10
mg_dvp_meth meth_2.2
neo (mg/m3) 0.008
neo_meth meth_2.2
nitrate (μmol/L) 0.1
nitrate_meth meth_2.2
nitrite (μmol/L) 1e-10
nitrite_meth meth_2.2
nrs_sample_code ROT20230515_20
nrs_trip_code ROT20230515
nucl_acid_ext meth_3.1.9
omics Genomics
oxygen (μmol/L) 221.7
oxygen_ctd_vol (mL/L) 202.0
oxygen_ctd_vol_meth meth_2.2
oxygen_meth meth_2.2
pass_fail P
perid (mg/m3) 0.006
perid_meth meth_2.2
phide_a (mg/m3) 1e-10
phide_a_meth meth_2.2
phosphate (μmol/L) 0.11
phosphate_meth meth_2.2
phytin_a (mg/m3) 1e-10
phytin_a_meth meth_2.2
phytin_b (mg/m3) 1e-10
phytin_b_meth meth_2.2
picoeukaryotes (cells/mL) 12189.5
picoeukaryotes_meth meth_2.2
pras (mg/m3) 0.02
pras_meth meth_2.2
prochlorococcus (cells/mL) 13000.0
prochlorococcus_meth meth_2.2
pyrophide_a (mg/m3) 1e-10
pyrophide_a_meth meth_2.2
pyrophytin_a (mg/m3) 1e-10
pyrophytin_a_meth meth_2.2
reads 83844.0
salinity (PSU) 35.3735
salinity_lab (PSU) 35.39
salinity_lab_meth meth_2.2
salinity_meth meth_2.2
samp_collect_device meth_1.4
samp_mat_process meth_1.4
sample_attribution IMOS|CSIRO
sample_database_file AM_db_v4.2_202402091224.db
sample_id 102.100.100/403625
sample_metadata_ingest_date 2024-02-09 12:24:08
sample_metadata_ingest_file AODN_AM_NRS_202402081638_GOLD_xlsx
sample_site_location_description Rottnest Island
sample_submitter Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938]
sample_type Pelagic
secchi_depth (m) 17.0
secchi_depth_meth meth_2.2
silicate (μmol/L) 2.3
silicate_meth meth_2.2
source_mat_id 102.100.100/403625
store_cond meth_1.4
synechococcus (cells/mL) 80367.5
synechococcus_meth meth_2.2
target A16
temp (degC) 21.5623
temp_meth meth_2.2
ticket BPAOPS-1562
turbidity (NTU) 0.3924
turbidity_meth meth_2.2
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403625
utc_date_sampled 2023-05-15
utc_time_sampled 01:10:00
viola (mg/m3) 0.006
viola_meth meth_2.2
zea (mg/m3) 0.057
zea_meth meth_2.2
zooplankton_biomass (mg/m3) 21.8073
zooplankton_biomass_meth meth_2.2int