Australian Microbiome Amplicons A16S 102.100.100/403636 LFR5G
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This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| ammonium (μmol/L) | 1e-10 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| collection_date | 2023-06-15T02:54:00 |
| comments | 403636_A16_LFR5G_CAACAGTAAC-TCTAGGATTG |
| conductivity_aqueous (S/m) | 5.1969 |
| conductivity_aqueous_meth | meth_2.2 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| density (kg/m3) | 1023.7061 |
| density_meth | meth_2.2 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Barrier Reef Marine Park [GAZ:00049080] |
| imos_site_code | NRSYON |
| index | CAACAGTAAC-TCTAGGATTG |
| lat_lon (decimal_degrees) | -19.3085 147.6184 |
| latitude (decimal_degrees) | -19.3085 |
| longitude (decimal_degrees) | 147.6184 |
| nitrate (μmol/L) | 1e-10 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 1e-10 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | YON20230615_0 |
| nrs_trip_code | YON20230615 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| phosphate (μmol/L) | 0.07 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 4602.0 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 40970.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 98836.0 |
| salinity (PSU) | 35.0303 |
| salinity_lab (PSU) | 35.075 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403636 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Yongala |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 13.0 |
| secchi_depth_meth | meth_2.2 |
| silicate (μmol/L) | 0.3 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403636 |
| store_cond | meth_1.4 |
| synechococcus (cells/mL) | 68285.0 |
| synechococcus_meth | meth_2.2 |
| target | A16 |
| temp (degC) | 23.9026 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1562 |
| tss (mg/L) | 1.0 |
| tss_meth | meth_2.2 |
| turbidity (NTU) | -1.6272 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403636 |
| utc_date_sampled | 2023-06-15 |
| utc_time_sampled | 02:54:00 |
| zooplankton_biomass (mg/m3) | 16.4983 |
| zooplankton_biomass_meth | meth_2.2int |