Australian Microbiome Amplicons A16S 102.100.100/403649 LFR5G
Dataset size is: 0.00 Bit
This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
Unable to determine correct embargo period.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| ammonium (μmol/L) | 1e-10 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.5031 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-08-10T23:45:00 |
| comments | 403649_A16_LFR5G_CAAGAGGCTT-AGCGTAGCAA |
| conductivity_aqueous (S/m) | 4.1442 |
| conductivity_aqueous_meth | meth_2.2 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| density (kg/m3) | 1026.8944 |
| density_meth | meth_2.2 |
| depth (m) | 50.0 |
| depth_lower (m) | 50.0 |
| depth_upper (m) | 50.0 |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Tasman Sea coastal waters of continental Australia [GAZ:00143737] |
| imos_site_code | NRSMAI |
| index | CAAGAGGCTT-AGCGTAGCAA |
| lat_lon (decimal_degrees) | -42.5967 148.2333 |
| latitude (decimal_degrees) | -42.5967 |
| longitude (decimal_degrees) | 148.2333 |
| nitrate (μmol/L) | 2.3 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.16 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | MAI20230810_50 |
| nrs_trip_code | MAI20230810 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | 262.7 |
| oxygen_ctd_vol (mL/L) | 236.1482 |
| oxygen_ctd_vol_meth | meth_2.2 |
| oxygen_meth | meth_2.2 |
| pass_fail | P |
| phosphate (μmol/L) | 0.3 |
| phosphate_meth | meth_2.2 |
| reads | 128598.0 |
| salinity (PSU) | 35.3757 |
| salinity_lab (PSU) | 35.396 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403649 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Maria Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 19.0 |
| secchi_depth_meth | meth_2.2 |
| silicate (μmol/L) | 0.9 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403649 |
| store_cond | meth_1.4 |
| target | A16 |
| temp (degC) | 13.0625 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1562 |
| turbidity (NTU) | 1.161 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403649 |
| utc_date_sampled | 2023-08-10 |
| utc_time_sampled | 23:45:00 |