Australian Microbiome Amplicons A16S 102.100.100/403673 LFR5G
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This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
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Data and Resources
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| ammonium (μmol/L) | 0.11 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| collection_date | 2023-07-31T03:27:00 |
| comments | 403673_A16_LFR5G_CCTTGCCGTA-ACTCCTATGG |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Eastern Indian Ocean coastal waters of Western Australia [GAZ:00051147] |
| imos_site_code | NRSROT |
| index | CCTTGCCGTA-ACTCCTATGG |
| lat_lon (decimal_degrees) | -32.0 115.4167 |
| latitude (decimal_degrees) | -32.0 |
| longitude (decimal_degrees) | 115.4167 |
| nitrate (μmol/L) | 1e-10 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 1e-10 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | ROT20230731_0 |
| nrs_trip_code | ROT20230731 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen (μmol/L) | 229.7 |
| oxygen_meth | meth_2.2 |
| pass_fail | P |
| phosphate (μmol/L) | 0.09 |
| phosphate_meth | meth_2.2 |
| reads | 104767.0 |
| salinity_lab (PSU) | 35.386 |
| salinity_lab_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403673 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Rottnest Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 47.5 |
| secchi_depth_meth | meth_2.2 |
| silicate (μmol/L) | 2.5 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403673 |
| store_cond | meth_1.4 |
| target | A16 |
| ticket | BPAOPS-1562 |
| tss (mg/L) | 0.4 |
| tss_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403673 |
| utc_date_sampled | 2023-07-31 |
| utc_time_sampled | 03:27:00 |