Australian Microbiome Amplicons A16S 102.100.100/403692 LFR5G
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This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.6646 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-04-18T22:33:00 |
| comments | 403692_A16_LFR5G_GCGGTTGATA-AAGATACAGC |
| conductivity_aqueous (S/m) | 4.5473 |
| conductivity_aqueous_meth | meth_2.2 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| density (kg/m3) | 1026.2833 |
| density_meth | meth_2.2 |
| depth (m) | 100.0 |
| depth_lower (m) | 100.0 |
| depth_upper (m) | 100.0 |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:East Australian Current [GAZ:00000352] |
| imos_site_code | NRSPHB |
| index | GCGGTTGATA-AAGATACAGC |
| lat_lon (decimal_degrees) | -34.1192 151.2267 |
| latitude (decimal_degrees) | -34.1192 |
| longitude (decimal_degrees) | 151.2267 |
| nitrate (μmol/L) | 9.1 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 1e-10 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | PHB20230418_100 |
| nrs_trip_code | PHB20230418 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen_ctd_vol (mL/L) | 163.6537 |
| oxygen_ctd_vol_meth | meth_2.2 |
| pass_fail | P |
| phosphate (μmol/L) | 0.71 |
| phosphate_meth | meth_2.2 |
| reads | 356379.0 |
| salinity (PSU) | 35.4395 |
| salinity_lab (PSU) | 35.456 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403692 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Port Hacking |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 14.0 |
| secchi_depth_meth | meth_2.2 |
| silicate (μmol/L) | 3.4 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403692 |
| store_cond | meth_1.4 |
| target | A16 |
| temp (degC) | 17.0327 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1562 |
| turbidity (NTU) | 0.1569 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403692 |
| utc_date_sampled | 2023-04-18 |
| utc_time_sampled | 22:33:00 |
| zooplankton_biomass (mg/m3) | 6.8534 |
| zooplankton_biomass_meth | meth_2.2int |