Australian Microbiome Amplicons A16S 102.100.100/403696 LFR5G
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If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| allo (mg/m3) | 0.025 |
| allo_meth | meth_2.2 |
| alpha_beta_car (mg/m3) | 0.019 |
| alpha_beta_car_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.09 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| anth (mg/m3) | 0.003 |
| anth_meth | meth_2.2 |
| asta (mg/m3) | 1e-10 |
| asta_meth | meth_2.2 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| but_fuco (mg/m3) | 0.035 |
| but_fuco_meth | meth_2.2 |
| cantha (mg/m3) | 1e-10 |
| cantha_meth | meth_2.2 |
| chlorophyll_a (mg/m3) | 0.387 |
| chlorophyll_a_meth | meth_2.2 |
| chlorophyll_b (mg/m3) | 0.07 |
| chlorophyll_b_meth | meth_2.2 |
| chlorophyll_c1 (mg/m3) | 1e-10 |
| chlorophyll_c1_meth | meth_2.2 |
| chlorophyll_c2 (mg/m3) | 0.063 |
| chlorophyll_c2_meth | meth_2.2 |
| chlorophyll_c3 (mg/m3) | 0.023 |
| chlorophyll_c3_meth | meth_2.2 |
| collection_date | 2023-05-17T23:55:00 |
| comments | 403696_A16_LFR5G_TAGGCCTCCT-AATTGACCAC |
| cphlide_a (mg/m3) | 0.01 |
| cphlide_a_meth | meth_2.2 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| depth (m) | 0.0 |
| depth_lower (m) | 0.0 |
| depth_upper (m) | 0.0 |
| diadino (mg/m3) | 0.021 |
| diadino_meth | meth_2.2 |
| diato (mg/m3) | 0.004 |
| diato_meth | meth_2.2 |
| dilution_used | neat |
| dino (mg/m3) | 1e-10 |
| dino_meth | meth_2.2 |
| dv_cphl_a (mg/m3) | 0.056 |
| dv_cphl_a_and_cphl_a (mg/m3) | 0.443 |
| dv_cphl_a_and_cphl_a_meth | meth_2.2 |
| dv_cphl_a_meth | meth_2.2 |
| dv_cphl_b (mg/m3) | 1e-10 |
| dv_cphl_b_and_cphl_b (mg/m3) | 0.07 |
| dv_cphl_b_and_cphl_b_meth | meth_2.2 |
| dv_cphl_b_meth | meth_2.2 |
| echin (mg/m3) | 1e-10 |
| echin_meth | meth_2.2 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| fuco (mg/m3) | 0.022 |
| fuco_meth | meth_2.2 |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Australian Bight [GAZ:00045604] |
| gyro (mg/m3) | 1e-10 |
| gyro_meth | meth_2.2 |
| hex_fuco (mg/m3) | 0.084 |
| hex_fuco_meth | meth_2.2 |
| imos_site_code | NRSKAI |
| index | TAGGCCTCCT-AATTGACCAC |
| keto_hex_fuco (mg/m3) | 1e-10 |
| keto_hex_fuco_meth | meth_2.2 |
| lat_lon (decimal_degrees) | -35.8322 136.4473 |
| latitude (decimal_degrees) | -35.8322 |
| longitude (decimal_degrees) | 136.4473 |
| lut (mg/m3) | 1e-10 |
| lut_meth | meth_2.2 |
| mg_dvp (mg/m3) | 1e-10 |
| mg_dvp_meth | meth_2.2 |
| neo (mg/m3) | 0.007 |
| neo_meth | meth_2.2 |
| nitrate (μmol/L) | 0.2 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.12 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | KAI20230517_0 |
| nrs_trip_code | KAI20230517 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| perid (mg/m3) | 0.005 |
| perid_meth | meth_2.2 |
| phide_a (mg/m3) | 1e-10 |
| phide_a_meth | meth_2.2 |
| phosphate (μmol/L) | 0.1 |
| phosphate_meth | meth_2.2 |
| phytin_a (mg/m3) | 1e-10 |
| phytin_a_meth | meth_2.2 |
| phytin_b (mg/m3) | 1e-10 |
| phytin_b_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 15594.5 |
| picoeukaryotes_meth | meth_2.2 |
| pras (mg/m3) | 0.014 |
| pras_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 32267.5 |
| prochlorococcus_meth | meth_2.2 |
| pyrophide_a (mg/m3) | 1e-10 |
| pyrophide_a_meth | meth_2.2 |
| pyrophytin_a (mg/m3) | 1e-10 |
| pyrophytin_a_meth | meth_2.2 |
| reads | 103616.0 |
| salinity_lab (PSU) | 35.937 |
| salinity_lab_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403696 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Kangaroo Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| silicate (μmol/L) | 0.6 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403696 |
| store_cond | meth_1.4 |
| synechococcus (cells/mL) | 55076.5 |
| synechococcus_meth | meth_2.2 |
| target | A16 |
| ticket | BPAOPS-1562 |
| tss (mg/L) | 1.0 |
| tss_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403696 |
| utc_date_sampled | 2023-05-17 |
| utc_time_sampled | 23:55:00 |
| viola (mg/m3) | 0.005 |
| viola_meth | meth_2.2 |
| zea (mg/m3) | 0.045 |
| zea_meth | meth_2.2 |
| zooplankton_biomass (mg/m3) | 7.4475 |
| zooplankton_biomass_meth | meth_2.2int |