Australian Microbiome Amplicons A16S 102.100.100/403697 LFR5G
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If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| ammonium (μmol/L) | 0.47 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.2641 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-05-17T23:55:00 |
| comments | 403697_A16_LFR5G_GCAGTTAGAC-GACGCATTGA |
| conductivity_aqueous (S/m) | 4.7528 |
| conductivity_aqueous_meth | meth_2.2 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| density (kg/m3) | 1026.653 |
| density_meth | meth_2.2 |
| depth (m) | 100.0 |
| depth_lower (m) | 100.0 |
| depth_upper (m) | 100.0 |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Australian Bight [GAZ:00045604] |
| imos_site_code | NRSKAI |
| index | GCAGTTAGAC-GACGCATTGA |
| lat_lon (decimal_degrees) | -35.8322 136.4473 |
| latitude (decimal_degrees) | -35.8322 |
| longitude (decimal_degrees) | 136.4473 |
| nitrate (μmol/L) | 0.7 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.15 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | KAI20230517_100 |
| nrs_trip_code | KAI20230517 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen_ctd_vol (mL/L) | 203.629 |
| oxygen_ctd_vol_meth | meth_2.2 |
| pass_fail | P |
| phosphate (μmol/L) | 0.17 |
| phosphate_meth | meth_2.2 |
| picoeukaryotes (cells/mL) | 6300.5 |
| picoeukaryotes_meth | meth_2.2 |
| prochlorococcus (cells/mL) | 11291.0 |
| prochlorococcus_meth | meth_2.2 |
| reads | 299952.0 |
| salinity (PSU) | 36.2663 |
| salinity_lab (PSU) | 36.352 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403697 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Kangaroo Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| silicate (μmol/L) | 0.8 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403697 |
| store_cond | meth_1.4 |
| synechococcus (cells/mL) | 14248.0 |
| synechococcus_meth | meth_2.2 |
| target | A16 |
| temp (degC) | 18.104 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1562 |
| turbidity (NTU) | 0.9512 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403697 |
| utc_date_sampled | 2023-05-17 |
| utc_time_sampled | 23:55:00 |
| zooplankton_biomass (mg/m3) | 7.4475 |
| zooplankton_biomass_meth | meth_2.2int |