Australian Microbiome Amplicons A16S 102.100.100/403699 LFR5G
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This dataset is under an embargo to enable primary access by research partners.
If you would like access this data please contact us here or contact the project lead directly (see details in the table below) for information about the embargo.
The embargo is for the following reason:
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Data and Resources
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| am_environment | Marine |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| chlorophyll_ctd (mg/m3) | 0.5116 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-10-26T21:00:00 |
| comments | 403699_A16_LFR5G_CGTCGAGCAT-GATGACACTG |
| conductivity_aqueous (S/m) | 4.4357 |
| conductivity_aqueous_meth | meth_2.2 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| density (kg/m3) | 1026.9836 |
| density_meth | meth_2.2 |
| depth (m) | 100.0 |
| depth_lower (m) | 100.0 |
| depth_upper (m) | 100.0 |
| dilution_used | neat |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Great Australian Bight [GAZ:00045604] |
| imos_site_code | NRSKAI |
| index | CGTCGAGCAT-GATGACACTG |
| lat_lon (decimal_degrees) | -35.8322 136.4473 |
| latitude (decimal_degrees) | -35.8322 |
| longitude (decimal_degrees) | 136.4473 |
| nrs_sample_code | KAI20231026_100 |
| nrs_trip_code | KAI20231026 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| oxygen_ctd_vol (mL/L) | 234.5799 |
| oxygen_ctd_vol_meth | meth_2.2 |
| pass_fail | P |
| reads | 659311.0 |
| salinity (PSU) | 35.892 |
| salinity_lab (PSU) | 35.911 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403699 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Kangaroo Island |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| source_mat_id | 102.100.100/403699 |
| store_cond | meth_1.4 |
| target | A16 |
| temp (degC) | 15.4184 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1562 |
| turbidity (NTU) | 0.2884 |
| turbidity_meth | meth_2.2 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403699 |
| utc_date_sampled | 2023-10-26 |
| utc_time_sampled | 21:00:00 |