Australian Microbiome Amplicons A16S 102.100.100/403701 LFR5G
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Reason | Unable to determine correct embargo period. |
| Access Control Mode | closed |
| Sequence Data Type | illumina-amplicons |
| allo (mg/m3) | 0.017 |
| allo_meth | meth_2.2 |
| alpha_beta_car (mg/m3) | 0.032 |
| alpha_beta_car_meth | meth_2.2 |
| am_environment | Marine |
| ammonium (μmol/L) | 0.19 |
| ammonium_meth | meth_2.2 |
| amplicon | A16S |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| anth (mg/m3) | 1e-10 |
| anth_meth | meth_2.2 |
| asta (mg/m3) | 1e-10 |
| asta_meth | meth_2.2 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/a16s/BPAOPS-1562/240223_AM_A16_UNSW_LFR5G/ |
| biotic_relationship | Free-living |
| but_fuco (mg/m3) | 1e-10 |
| but_fuco_meth | meth_2.2 |
| cantha (mg/m3) | 1e-10 |
| cantha_meth | meth_2.2 |
| chlorophyll_a (mg/m3) | 0.621 |
| chlorophyll_a_meth | meth_2.2 |
| chlorophyll_b (mg/m3) | 0.07 |
| chlorophyll_b_meth | meth_2.2 |
| chlorophyll_c1 (mg/m3) | 1e-10 |
| chlorophyll_c1_meth | meth_2.2 |
| chlorophyll_c2 (mg/m3) | 0.061 |
| chlorophyll_c2_meth | meth_2.2 |
| chlorophyll_c3 (mg/m3) | 0.028 |
| chlorophyll_c3_meth | meth_2.2 |
| chlorophyll_ctd (mg/m3) | 0.3767 |
| chlorophyll_ctd_meth | meth_2.2 |
| collection_date | 2023-05-24T21:30:00 |
| comments | 403701_A16_LFR5G_GAAGGAGCCT-CCTCCATTAT |
| conductivity_aqueous (S/m) | 5.314 |
| conductivity_aqueous_meth | meth_2.2 |
| cphlide_a (mg/m3) | 0.045 |
| cphlide_a_meth | meth_2.2 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| density (kg/m3) | 1022.4754 |
| density_meth | meth_2.2 |
| depth (m) | 17.0 |
| depth_lower (m) | 17.0 |
| depth_upper (m) | 17.0 |
| diadino (mg/m3) | 0.015 |
| diadino_meth | meth_2.2 |
| diato (mg/m3) | 1e-10 |
| diato_meth | meth_2.2 |
| dilution_used | neat |
| dino (mg/m3) | 1e-10 |
| dino_meth | meth_2.2 |
| dv_cphl_a (mg/m3) | 1e-10 |
| dv_cphl_a_and_cphl_a (mg/m3) | 0.621 |
| dv_cphl_a_and_cphl_a_meth | meth_2.2 |
| dv_cphl_a_meth | meth_2.2 |
| dv_cphl_b (mg/m3) | 1e-10 |
| dv_cphl_b_and_cphl_b (mg/m3) | 0.07 |
| dv_cphl_b_and_cphl_b_meth | meth_2.2 |
| dv_cphl_b_meth | meth_2.2 |
| echin (mg/m3) | 1e-10 |
| echin_meth | meth_2.2 |
| env_broad_scale | 7 Other |
| env_local_scale | 7.2.1 Open ocean water-conservation |
| env_medium | Sea water [ENVO_00002149] |
| flow_id | LFR5G |
| fuco (mg/m3) | 0.162 |
| fuco_meth | meth_2.2 |
| funding_agency | IMOS|CSIRO |
| general_env_feature | Marine - neritic (coastal off shore) |
| geo_loc_name | Australia:Beagle Gulf [GAZ:00051048] |
| gyro (mg/m3) | 1e-10 |
| gyro_meth | meth_2.2 |
| hex_fuco (mg/m3) | 0.024 |
| hex_fuco_meth | meth_2.2 |
| imos_site_code | NRSDAR |
| index | GAAGGAGCCT-CCTCCATTAT |
| keto_hex_fuco (mg/m3) | 1e-10 |
| keto_hex_fuco_meth | meth_2.2 |
| lat_lon (decimal_degrees) | -12.4 130.768 |
| latitude (decimal_degrees) | -12.4 |
| longitude (decimal_degrees) | 130.768 |
| lut (mg/m3) | 1e-10 |
| lut_meth | meth_2.2 |
| mg_dvp (mg/m3) | 1e-10 |
| mg_dvp_meth | meth_2.2 |
| neo (mg/m3) | 0.005 |
| neo_meth | meth_2.2 |
| nitrate (μmol/L) | 0.2 |
| nitrate_meth | meth_2.2 |
| nitrite (μmol/L) | 0.3 |
| nitrite_meth | meth_2.2 |
| nrs_sample_code | DAR20230524_2130_17 |
| nrs_trip_code | DAR20230524_2130 |
| nucl_acid_ext | meth_3.1.9 |
| omics | Genomics |
| pass_fail | P |
| perid (mg/m3) | 0.005 |
| perid_meth | meth_2.2 |
| phide_a (mg/m3) | 1e-10 |
| phide_a_meth | meth_2.2 |
| phosphate (μmol/L) | 0.37 |
| phosphate_meth | meth_2.2 |
| phytin_a (mg/m3) | 1e-10 |
| phytin_a_meth | meth_2.2 |
| phytin_b (mg/m3) | 1e-10 |
| phytin_b_meth | meth_2.2 |
| pras (mg/m3) | 0.021 |
| pras_meth | meth_2.2 |
| pyrophide_a (mg/m3) | 1e-10 |
| pyrophide_a_meth | meth_2.2 |
| pyrophytin_a (mg/m3) | 1e-10 |
| pyrophytin_a_meth | meth_2.2 |
| reads | 176468.0 |
| salinity (PSU) | 34.2066 |
| salinity_lab (PSU) | 34.202 |
| salinity_lab_meth | meth_2.2 |
| salinity_meth | meth_2.2 |
| samp_collect_device | meth_1.4 |
| samp_mat_process | meth_1.4 |
| sample_attribution | IMOS|CSIRO |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/403701 |
| sample_metadata_ingest_date | 2024-02-09 12:24:08 |
| sample_metadata_ingest_file | AODN_AM_NRS_202402081638_GOLD_xlsx |
| sample_site_location_description | Darwin |
| sample_submitter | Jodie van de Kamp [https://orcid.org/0000-0003-2167-0938] |
| sample_type | Pelagic |
| secchi_depth (m) | 1.5 |
| secchi_depth_meth | meth_2.2 |
| silicate (μmol/L) | 4.8 |
| silicate_meth | meth_2.2 |
| source_mat_id | 102.100.100/403701 |
| store_cond | meth_1.4 |
| target | A16 |
| temp (degC) | 26.1035 |
| temp_meth | meth_2.2 |
| ticket | BPAOPS-1562 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/403701 |
| utc_date_sampled | 2023-05-24 |
| utc_time_sampled | 21:30:00 |
| viola (mg/m3) | 0.004 |
| viola_meth | meth_2.2 |
| zea (mg/m3) | 0.069 |
| zea_meth | meth_2.2 |
| zooplankton_biomass (mg/m3) | 94.7733 |
| zooplankton_biomass_meth | meth_2.2int |