Australian Microbiome Amplicons ITS 102.100.100/138298 KBJ9G
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2022-07-12 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/bygg-mn84 |
| am_environment | Soil |
| amplicon | ITS |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-1219/ |
| bioplatforms_dataset_id | 102.100.100/401925 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0010 |
| biotic_relationship | Free-living |
| ccg_jira_ticket | BPAOPS-1219 |
| collection_date | 2021-12-13T00:05:00 |
| comments | 138298_ITS_KBJ9C_GCTTCGGT-TAGTGTAG |
| data_type | ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401925 |
| date_of_transfer | 2022-04-13 |
| date_of_transfer_to_archive | 2022-04-13 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.01 |
| depth_upper (m) | 0.0 |
| description | MiSeq data package |
| dilution_used | neat |
| env_broad_scale | 5 Intensive Uses |
| env_local_scale | 5.5.3 Recreation and culture |
| env_medium | Soil [ENVO_00001998] |
| flow_id | KBJ9G |
| folder_name | 20220413_AM_ITS_UNSW_KBJ9G |
| funding_agency | AMI_UniMelb |
| general_env_feature | Temperate |
| geo_loc_name | WGS84 |
| index | GCTTCGGT-TAGTGTAG |
| lat_lon (decimal_degrees) | -37.9415 145.0535 |
| latitude (decimal_degrees) | -37.9415 |
| local_class | Podosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 145.0535 |
| omics | Genomics |
| pass_fail | P |
| pcr_plate_name | MAZ9687_9834_10214_10215_ITS_SetA |
| reads | 56189.0 |
| samp_collect_device | meth_i Auger ( diameter) x 15 cores; |
| samp_mat_process | meth_1.2. Soil Sampling (as per UTAS Urban Soil & Aerial Microbiome Study) |
| sample_attribution | UGS_UMelb |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/138298 |
| sample_metadata_ingest_date | 2024-02-01 13:41:16 |
| sample_metadata_ingest_file | HahsMavoaAponte_ContextualMetadataAM0010_UrbanGreenspaceMelb_Soil_20220616_xlsx |
| sample_site_location_description | GR Bricker Reserve_H |
| sample_submitter | Amy Hahs |
| sample_type | Soil |
| sequencing_facility | Ramaciotti |
| source_mat_id | 102.100.100/138298 |
| store_cond | meth_esky then -80c freezer |
| target | ITS |
| ticket | BPAOPS-1219 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/138298 |
| utc_date_sampled | 2021-12-13 |
| utc_time_sampled | 00:05:00 |
| vegetation_type | Grassland |