Australian Microbiome Amplicons ITS 102.100.100/139081 JC892
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2021-01-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/qjga-fk84 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 3.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | ITS |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-975/ |
| bioplatforms_dataset_id | 102.100.100/401937 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0021 |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.16 |
| boron_hot_cacl2_meth | meth_2.1 |
| ccg_jira_ticket | BPAOPS-975 |
| clay (%) | 1e-10 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 95.86 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2020-04-26T04:00:00 |
| color | DKGR |
| comments | 139081_ITS_JC892_GAGAGAAT-CTAGAGCT |
| conductivity (dS/m) | 1e-10 |
| conductivity_meth | meth_2.1 |
| data_type | ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401937 |
| date_of_transfer | 2020-10-22 |
| date_of_transfer_to_archive | 2020-11-09 |
| depth (m) | 0.1 |
| depth_lower (m) | 0.15 |
| depth_upper (m) | 0.1 |
| description | MiSeq data package |
| dilution_used | neat |
| dtpa_copper (mg/kg) | 0.82 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 11.3 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 1.02 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.38 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 48.6511 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.1 Strict nature reserve |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.03 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 1.07 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.28 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.01 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.05 |
| exc_sodium_meth | meth_2.1 |
| fine_sand (%) | 1.25 |
| fine_sand_meth | meth_2.1 |
| fire | 1993-03-01 |
| flow_id | JC892 |
| folder_name | 20201022_AM_ITS_UNSW_JC892 |
| funding_agency | ECU RTP Scholarship |
| general_env_feature | Other (Mediterranean) |
| geo_loc_name | Australia:Western Australia |
| gravel (%) | 0 |
| gravel_meth | meth_2.1 |
| horizon | A |
| index | GAGAGAAT-CTAGAGCT |
| lat_lon (decimal_degrees) | -31.382246 115.772632 |
| latitude (decimal_degrees) | -31.382246 |
| local_class | Podosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 115.772632 |
| nitrate_nitrogen (mg/kg) | 1e-10 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| omics | Genomics |
| organic_carbon (%) | 1.53 |
| organic_carbon_meth | meth_2.1 |
| pass_fail | P |
| ph | 4.1 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 6.0 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 1e-10 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 1e-10 |
| potassium_colwell_meth | meth_2.1 |
| reads | 88509.0 |
| samp_collect_device | meth_1.1 |
| samp_mat_process | meth_2.1 |
| sample_attribution | Aaron Brace; Anna Hopkins; Joe Fontaine; Katinka Ruthrof; Ben Miller |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/139081 |
| sample_metadata_ingest_date | 2021-04-23 11:16:08 |
| sample_metadata_ingest_file | Brace_completed_AM_ContextualMetadata_AM0021_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; Brace_completed_AM_ContextualMetadata_AM0021_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_site_location_description | Yeal_Nature reserve |
| sample_submitter | Aaron Brace |
| sample_type | Soil |
| sand (%) | 97.11 |
| sand_meth | meth_2.1 |
| sequencing_facility | Ramaciotti |
| silt (%) | 1e-10 |
| silt_meth | meth_2.1 |
| source_mat_id | 102.100.100/139081 |
| store_cond | meth_1.1 |
| sulphur (mg/kg) | 1.7 |
| sulphur_meth | meth_2.1 |
| target | ITS |
| temp (degC) | 24.0 |
| temp_meth | meth_1.1 |
| texture | 1 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-975 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139081 |
| utc_date_sampled | 2020-04-26 |
| utc_time_sampled | 04:00:00 |
| vegetation_type | Woodland |