Australian Microbiome Amplicons ITS 102.100.100/139602 JC892
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:90:am-consortium-members |
| Access Control Date | 2021-01-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/gc1p-cr94 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 6.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | ITS |
| analysis_software | MiSeq Reporter |
| analysis_software_version | 2.6.2.3 |
| analytical_platform | MiSeq |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/amd/amplicons-miseq/its/BPAOPS-975/ |
| bioplatforms_dataset_id | 102.100.100/401935 |
| bioplatforms_project | Australian Microbiome Initiative (AM) |
| bioplatforms_project_code | AM0019 |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 4.61 |
| boron_hot_cacl2_meth | meth_2.1 |
| ccg_jira_ticket | BPAOPS-975 |
| clay (%) | 27.77 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 58.2 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2020-06-09T05:56:00 |
| color | BRGR |
| comments | 139602_ITS_JC892_TGTAATTG-CTAGAGCT |
| conductivity (dS/m) | 51.924 |
| conductivity_meth | meth_2.1 |
| data_type | ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401935 |
| date_of_transfer | 2020-10-22 |
| date_of_transfer_to_archive | 2020-11-09 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | MiSeq data package |
| dilution_used | neat |
| dna_concentration_submitter (ng/μL) | 3.45 |
| dtpa_copper (mg/kg) | 0.95 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 65.3 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 7.18 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.54 |
| dtpa_zinc_meth | meth_2.1 |
| env_broad_scale | 6 Water |
| env_local_scale | 6.1.2 Lake—production |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.33 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 0.61 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 6.14 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.85 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 27.11 |
| exc_sodium_meth | meth_2.1 |
| fine_sand (%) | 12.11 |
| fine_sand_meth | meth_2.1 |
| flow_id | JC892 |
| folder_name | 20201022_AM_ITS_UNSW_JC892 |
| funding_agency | AMI |
| general_env_feature | lacustrine (lakes) |
| geo_loc_name | Australia:Western Australia |
| gravel (%) | 0.0 |
| gravel_meth | meth_2.1 |
| index | TGTAATTG-CTAGAGCT |
| lat_lon (decimal_degrees) | -31.008657 118.762721 |
| latitude (decimal_degrees) | -31.008657 |
| local_class | Sodosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 118.762721 |
| nitrate_nitrogen (mg/kg) | 1e-10 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.10 |
| omics | Genomics |
| organic_carbon (%) | 0.5 |
| organic_carbon_meth | meth_2.1 |
| pass_fail | P |
| ph | 4.4 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 4.6 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 1e-10 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 410.0 |
| potassium_colwell_meth | meth_2.1 |
| reads | 305141.0 |
| samp_collect_device | meth_1.1 |
| sample_attribution | E. Watkin |
| sample_database_file | AM_db_v4.2_202402091224.db |
| sample_id | 102.100.100/139602 |
| sample_metadata_ingest_date | 2021-04-23 11:16:05 |
| sample_metadata_ingest_file | BOASE_Version2_AM_ContextualMetadata_AM0019_Watkin_SOIL_xlsx |
| sample_metadata_update_history | All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_submitter | Katelyn Boase |
| sample_type | Soil |
| sand (%) | 70.31 |
| sand_meth | meth_2.1 |
| sequencing_facility | Ramaciotti |
| silt (%) | 1.92 |
| silt_meth | meth_2.1 |
| source_mat_id | 102.100.100/139602 |
| store_cond | meth_liquid nitrogen (DNA) and room temp for chemical analysis. |
| sulphur (mg/kg) | 284.6 |
| sulphur_meth | meth_2.1 |
| target | ITS |
| texture | 2.5 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-975 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/139602 |
| utc_date_sampled | 2020-06-09 |
| utc_time_sampled | 05:56:00 |
| vegetation_type | Other |